Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   TTHNP4_RS14400 Genome accession   NZ_LR027517
Coordinates   237223..238113 (-) Length   296 a.a.
NCBI ID   WP_124104240.1    Uniprot ID   A0A3P4AQ59
Organism   Thermus thermophilus isolate TTHNAR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 232223..243113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTHNP4_RS01370 (TTHN1_00273) - 233164..233718 (-) 555 WP_124104237.1 shikimate kinase -
  TTHNP4_RS01375 (TTHN1_00274) aroC 233743..234894 (-) 1152 WP_124104238.1 chorismate synthase -
  TTHNP4_RS01380 (TTHN1_00275) pilQ 234953..237226 (-) 2274 WP_124104239.1 secretin N-terminal domain-containing protein Machinery gene
  TTHNP4_RS14400 (TTHN1_00276) pilW 237223..238113 (-) 891 WP_124104240.1 competence protein Machinery gene
  TTHNP4_RS01390 (TTHN1_00277) pilO 238110..238691 (-) 582 WP_124104241.1 type 4a pilus biogenesis protein PilO Machinery gene
  TTHNP4_RS01395 (TTHN1_00278) pilN 238681..239304 (-) 624 WP_011228637.1 competence protein Machinery gene
  TTHNP4_RS01400 (TTHN1_00279) pilM 239297..240430 (-) 1134 WP_124104242.1 type IV pilus assembly protein PilM Machinery gene
  TTHNP4_RS01405 (TTHN1_00280) - 240560..241564 (-) 1005 WP_124104243.1 homoisocitrate dehydrogenase -
  TTHNP4_RS01410 (TTHN1_00281) - 241619..242110 (-) 492 WP_011173430.1 DUF5317 domain-containing protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 30322.76 Da        Isoelectric Point: 4.4097

>NTDB_id=1115734 TTHNP4_RS14400 WP_124104240.1 237223..238113(-) (pilW) [Thermus thermophilus isolate TTHNAR1]
MKNAWQRLKEAWENLPRSTKLLLAALLLVGGVALWYVGLYLPAQVAETPTPVPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPASSQEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASSASRPAPVPEGPAVRVQTPAPAPQAAPATRP
IPGTSGALPAPKILSPALSAPLPQARETPPRVAVPTALVEAPLPGPEEKGAEEEPPTPASPLERLVAEKGLRLSGTLLGP
VSVAILESKEGYLVVPAGSPIPGTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ

Nucleotide


Download         Length: 891 bp        

>NTDB_id=1115734 TTHNP4_RS14400 WP_124104240.1 237223..238113(-) (pilW) [Thermus thermophilus isolate TTHNAR1]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGAAAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAACGCCCACCCCGGTCCCCT
CCACGCAGGTCATCGAGGCTCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAGGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGGAGGCCCAAGCGCCCCCGCCTGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAATCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCTCCGCCTCCCGCC
CGGCGCCCGTCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCTGCCCCTGCCCCCCAGGCAGCCCCCGCCACCCGGCCC
ATCCCCGGGACCTCCGGCGCCCTCCCGGCGCCCAAGATCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGA
GACGCCGCCTAGGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAGGGGGCGGAAGAGG
AGCCCCCCACCCCGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCC
GTGAGCGTGGCCATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGCGGGAAGCCCCATCCCCGGCACGGAGGCCGT
GGTGCGCCAGGTGGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAACCTGTCCCTCGTCCAAGCTGGAG
GTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P4AQ59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

96.284

100

0.963

Multiple sequence alignment