Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BAMMD1_RS15810 Genome accession   NZ_LN999829
Coordinates   3326745..3327434 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain B25     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3321745..3332434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMMD1_RS15775 (BAMMD1_3181) - 3321943..3322425 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BAMMD1_RS15780 (BAMMD1_3182) flgM 3322440..3322706 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAMMD1_RS15785 (BAMMD1_3183) - 3322776..3323195 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  BAMMD1_RS15790 (BAMMD1_3184) comFC 3323269..3323958 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  BAMMD1_RS15795 (BAMMD1_3185) - 3323964..3324248 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAMMD1_RS15800 (BAMMD1_3186) comFA 3324306..3325691 (-) 1386 WP_060387195.1 DEAD/DEAH box helicase Machinery gene
  BAMMD1_RS15805 (BAMMD1_3187) - 3325799..3326647 (-) 849 WP_060387196.1 DegV family protein -
  BAMMD1_RS15810 (BAMMD1_3188) degU 3326745..3327434 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAMMD1_RS15815 (BAMMD1_3189) degS 3327511..3328674 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  BAMMD1_RS15820 (BAMMD1_3190) - 3328897..3329544 (+) 648 WP_003151384.1 YigZ family protein -
  BAMMD1_RS15825 (BAMMD1_3191) - 3329549..3330763 (+) 1215 WP_014305930.1 LCP family protein -
  BAMMD1_RS15830 (BAMMD1_3192) - 3330853..3331929 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1115452 BAMMD1_RS15810 WP_003219701.1 3326745..3327434(-) (degU) [Bacillus velezensis strain B25]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1115452 BAMMD1_RS15810 WP_003219701.1 3326745..3327434(-) (degU) [Bacillus velezensis strain B25]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment