Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BAMMD1_RS15800 Genome accession   NZ_LN999829
Coordinates   3324306..3325691 (-) Length   461 a.a.
NCBI ID   WP_060387195.1    Uniprot ID   -
Organism   Bacillus velezensis strain B25     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3319306..3330691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMMD1_RS15765 (BAMMD1_3179) flgL 3319481..3320398 (-) 918 WP_060387194.1 flagellar hook-associated protein FlgL -
  BAMMD1_RS15770 (BAMMD1_3180) flgK 3320410..3321927 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  BAMMD1_RS15775 (BAMMD1_3181) - 3321943..3322425 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BAMMD1_RS15780 (BAMMD1_3182) flgM 3322440..3322706 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAMMD1_RS15785 (BAMMD1_3183) - 3322776..3323195 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  BAMMD1_RS15790 (BAMMD1_3184) comFC 3323269..3323958 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  BAMMD1_RS15795 (BAMMD1_3185) - 3323964..3324248 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BAMMD1_RS15800 (BAMMD1_3186) comFA 3324306..3325691 (-) 1386 WP_060387195.1 DEAD/DEAH box helicase Machinery gene
  BAMMD1_RS15805 (BAMMD1_3187) - 3325799..3326647 (-) 849 WP_060387196.1 DegV family protein -
  BAMMD1_RS15810 (BAMMD1_3188) degU 3326745..3327434 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAMMD1_RS15815 (BAMMD1_3189) degS 3327511..3328674 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  BAMMD1_RS15820 (BAMMD1_3190) - 3328897..3329544 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52496.96 Da        Isoelectric Point: 10.1928

>NTDB_id=1115451 BAMMD1_RS15800 WP_060387195.1 3324306..3325691(-) (comFA) [Bacillus velezensis strain B25]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKAYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRTDELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1115451 BAMMD1_RS15800 WP_060387195.1 3324306..3325691(-) (comFA) [Bacillus velezensis strain B25]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGCATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGACTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629

Multiple sequence alignment