Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PADK1_RS23875 Genome accession   NZ_LN870292
Coordinates   5043543..5044880 (+) Length   445 a.a.
NCBI ID   WP_034009542.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa DK1 substr. NH57388A     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5038543..5049880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PADK1_RS23850 (PADK1_04649) pgeF 5038686..5039414 (-) 729 WP_003116257.1 peptidoglycan editing factor PgeF -
  PADK1_RS23855 (PADK1_04650) rluD 5039411..5040373 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PADK1_RS23860 (PADK1_04651) - 5040519..5041544 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  PADK1_RS23865 (PADK1_04652) - 5041701..5041946 (+) 246 WP_003102591.1 PP0621 family protein -
  PADK1_RS23870 (PADK1_04653) pilS 5041936..5043528 (+) 1593 WP_003123394.1 two-component system sensor histidine kinase PilS Regulator
  PADK1_RS23875 (PADK1_04654) pilR 5043543..5044880 (+) 1338 WP_034009542.1 two-component system response regulator PilR Regulator
  PADK1_RS23880 (PADK1_04655) thiO 5044926..5046020 (-) 1095 WP_034009544.1 glycine oxidase ThiO -
  PADK1_RS23885 (PADK1_04656) - 5046160..5046660 (+) 501 WP_003116259.1 GspH/FimT family pseudopilin -
  PADK1_RS23890 (PADK1_04657) - 5046783..5047271 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  PADK1_RS23895 (PADK1_04658) pilV 5047281..5047805 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  PADK1_RS23900 (PADK1_04659) - 5047814..5048629 (+) 816 WP_003116262.1 PilW family protein -
  PADK1_RS23905 (PADK1_04660) - 5048626..5049231 (+) 606 WP_003116263.1 pilus assembly PilX family protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49751.09 Da        Isoelectric Point: 5.8669

>NTDB_id=1114917 PADK1_RS23875 WP_034009542.1 5043543..5044880(+) (pilR) [Pseudomonas aeruginosa DK1 substr. NH57388A]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGEAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1114917 PADK1_RS23875 WP_034009542.1 5043543..5044880(+) (pilR) [Pseudomonas aeruginosa DK1 substr. NH57388A]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGTCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGAAGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.393

100

0.387

Multiple sequence alignment