Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KKKWG1_RS09365 Genome accession   NZ_LN869922
Coordinates   1801941..1802780 (-) Length   279 a.a.
NCBI ID   WP_341785704.1    Uniprot ID   -
Organism   Kingella kingae strain KWG1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1796941..1807780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKKWG1_RS09340 (KKKWG1_1902) - 1798059..1799252 (+) 1194 WP_019389685.1 acetate kinase -
  KKKWG1_RS09345 (KKKWG1_1903) - 1799329..1799949 (-) 621 WP_019389684.1 L-threonylcarbamoyladenylate synthase -
  KKKWG1_RS09350 (KKKWG1_1904) pncC 1799959..1800435 (-) 477 WP_003787789.1 nicotinamide-nucleotide amidase -
  KKKWG1_RS09355 (KKKWG1_1905) zapD 1800455..1801216 (-) 762 WP_019389683.1 cell division protein ZapD -
  KKKWG1_RS09360 (KKKWG1_1906) coaE 1801331..1801939 (-) 609 WP_003787784.1 dephospho-CoA kinase -
  KKKWG1_RS09365 (KKKWG1_1907) pilD 1801941..1802780 (-) 840 WP_341785704.1 A24 family peptidase Machinery gene
  KKKWG1_RS09370 (KKKWG1_1908) pilG 1802852..1804120 (-) 1269 WP_019389681.1 type II secretion system F family protein Machinery gene
  KKKWG1_RS09375 (KKKWG1_1909) pilF 1804167..1805852 (-) 1686 WP_003787777.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KKKWG1_RS09380 (KKKWG1_1910) lysA 1806038..1807267 (-) 1230 WP_099046166.1 diaminopimelate decarboxylase -
  KKKWG1_RS11730 (KKKWG1_1911) - 1807264..1807425 (-) 162 WP_003787775.1 lipoprotein -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31045.82 Da        Isoelectric Point: 7.8146

>NTDB_id=1114886 KKKWG1_RS09365 WP_341785704.1 1801941..1802780(-) (pilD) [Kingella kingae strain KWG1]
MVIYRLPVMLNRDWTEAACEQLNINDEFWQKQPASVEQCLREHFGLNRAVSGTFNLMTPPSRCGNCGSAVRPWQNIPVLS
WLMLRGKCAGCHTPISIRYPLVELLTGVLFAVMAFKYGWTWYTVGACLFTAYVVAMTFIDADTQLLPDDLTIPLMRWGLL
FNLLTGFIPLTQSVWGMLIGYMSLWTLSQTYKLIRGVDGMGAGDFKMLAAIGAWLGAWILPVVIFAAAMVFLVVAIIRGI
GKEQPMAYGPCLGVAGWLVFLFYDVVMRGVTAWLTGSGF

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1114886 KKKWG1_RS09365 WP_341785704.1 1801941..1802780(-) (pilD) [Kingella kingae strain KWG1]
GTGGTCATTTATCGGCTGCCCGTGATGCTTAACCGCGATTGGACAGAAGCAGCCTGCGAGCAACTCAATATCAACGATGA
ATTTTGGCAAAAGCAGCCTGCATCCGTAGAACAATGTCTGCGCGAACACTTTGGCTTAAACCGTGCTGTGTCAGGCACAT
TCAACTTGATGACACCGCCATCGCGTTGTGGCAACTGCGGTTCAGCCGTGCGCCCTTGGCAAAACATTCCTGTGTTGAGC
TGGTTGATGTTGCGTGGCAAATGTGCAGGCTGCCACACACCCATTAGCATTCGCTATCCTTTGGTAGAACTACTCACAGG
CGTGTTGTTTGCGGTAATGGCATTCAAGTATGGCTGGACTTGGTACACCGTAGGCGCGTGTTTGTTTACCGCTTATGTCG
TTGCCATGACCTTTATTGATGCCGACACGCAACTTTTGCCCGATGACTTAACCATTCCATTGATGCGCTGGGGCTTGTTG
TTTAACTTGCTCACAGGCTTCATTCCGCTAACGCAATCGGTTTGGGGCATGTTGATTGGCTACATGAGTCTGTGGACGCT
GTCGCAAACCTATAAACTAATTCGTGGCGTGGACGGCATGGGCGCAGGCGATTTCAAAATGCTGGCTGCGATTGGTGCGT
GGCTGGGCGCATGGATTTTGCCTGTGGTGATTTTTGCTGCGGCGATGGTGTTTTTGGTGGTTGCCATTATTCGGGGCATT
GGCAAAGAACAGCCAATGGCATACGGCCCGTGTTTGGGCGTTGCCGGCTGGTTGGTCTTTTTGTTTTACGATGTGGTGAT
GCGTGGCGTAACAGCTTGGCTCACTGGGTCGGGTTTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(129-235)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(2-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

50.545

98.566

0.498
  pilD Vibrio cholerae strain A1552

39.927

97.849

0.391
  pilD Acinetobacter baumannii D1279779

40

96.774

0.387
  pilD Vibrio campbellii strain DS40M4

40.152

94.624

0.38
  pilD Acinetobacter nosocomialis M2

39.259

96.774

0.38

Multiple sequence alignment