Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABR2090_RS15135 Genome accession   NZ_LN868200
Coordinates   3139274..3139684 (-) Length   136 a.a.
NCBI ID   WP_043960841.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate R2090     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3134274..3144684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2090_RS15105 (ABR2090_3046) - 3134360..3134629 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABR2090_RS15110 (ABR2090_3047) rapZ 3134626..3135477 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ABR2090_RS15115 (ABR2090_3048) panC 3135500..3136348 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABR2090_RS15120 (ABR2090_3049) panB 3136352..3137161 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABR2090_RS15125 (ABR2090_3050) folK 3137207..3137689 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABR2090_RS15130 (ABR2090_3051) pcnB 3137686..3139149 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ABR2090_RS15135 (ABR2090_3052) comEA 3139274..3139684 (-) 411 WP_043960841.1 ComEA family DNA-binding protein Machinery gene
  ABR2090_RS15140 (ABR2090_3053) mazG 3139653..3140459 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  ABR2090_RS15145 (ABR2090_3054) - 3140571..3141344 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  ABR2090_RS15150 (ABR2090_3055) - 3141389..3143695 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15670.97 Da        Isoelectric Point: 10.3495

>NTDB_id=1114831 ABR2090_RS15135 WP_043960841.1 3139274..3139684(-) (comEA) [Acinetobacter baumannii isolate R2090]
MQYSMRFWKNKYFVLIMLCLGVISPSVCAQSFDQNFQEWKVKQQMYDQKLNISKSSHSNSSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1114831 ABR2090_RS15135 WP_043960841.1 3139274..3139684(-) (comEA) [Acinetobacter baumannii isolate R2090]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTGCGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGTTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATAGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

100

100

1
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

43.511

96.324

0.419

Multiple sequence alignment