Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABR2090_RS11980 Genome accession   NZ_LN868200
Coordinates   2504054..2504761 (+) Length   235 a.a.
NCBI ID   WP_000203218.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate R2090     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2499054..2509761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2090_RS11965 (ABR2090_2410) - 2501870..2502676 (+) 807 WP_001237337.1 peptidoglycan DD-metalloendopeptidase family protein -
  ABR2090_RS11970 (ABR2090_2411) - 2502673..2503098 (-) 426 WP_001026231.1 GNAT family N-acetyltransferase -
  ABR2090_RS11975 (ABR2090_2412) - 2503192..2503614 (-) 423 WP_001195082.1 OsmC family protein -
  ABR2090_RS19065 - 2503693..2503812 (-) 120 Protein_2365 hypothetical protein -
  ABR2090_RS11980 (ABR2090_2413) crp 2504054..2504761 (+) 708 WP_000203218.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABR2090_RS11985 (ABR2090_2414) - 2504922..2505971 (+) 1050 WP_001159800.1 NADP(H)-dependent aldo-keto reductase -
  ABR2090_RS11990 (ABR2090_2415) - 2506030..2506809 (-) 780 WP_001034598.1 M48 family metallopeptidase -
  ABR2090_RS11995 (ABR2090_2416) - 2506926..2507243 (-) 318 WP_000776215.1 hypothetical protein -
  ABR2090_RS12000 (ABR2090_2417) - 2507365..2508684 (-) 1320 WP_000517794.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26581.21 Da        Isoelectric Point: 4.6676

>NTDB_id=1114826 ABR2090_RS11980 WP_000203218.1 2504054..2504761(+) (crp) [Acinetobacter baumannii isolate R2090]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEETPVTDEDYDEEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1114826 ABR2090_RS11980 WP_000203218.1 2504054..2504761(+) (crp) [Acinetobacter baumannii isolate R2090]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCGGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTGATACTTCATTAGAAGAAACCCCAGTCACTGACGAAGACTATGATGAAGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

100

1
  crp Vibrio cholerae strain A1552

47.343

88.085

0.417
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4

Multiple sequence alignment