Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   ABR2090_RS01765 Genome accession   NZ_LN868200
Coordinates   369324..373130 (+) Length   1268 a.a.
NCBI ID   WP_000768961.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate R2090     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364324..378130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2090_RS01735 (ABR2090_0348) gmk 364596..365225 (-) 630 WP_000015937.1 guanylate kinase -
  ABR2090_RS01740 (ABR2090_0349) ispH 365348..366298 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABR2090_RS01745 (ABR2090_0350) fimU 366468..366941 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABR2090_RS01750 (ABR2090_0351) pilV 366935..367495 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABR2090_RS01755 (ABR2090_0352) pilW 367496..368497 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABR2090_RS01760 (ABR2090_0353) pilX 368494..369312 (+) 819 WP_000149372.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABR2090_RS01765 (ABR2090_0354) pilY1 369324..373130 (+) 3807 WP_000768961.1 PilC/PilY family type IV pilus protein Machinery gene
  ABR2090_RS01770 (ABR2090_0355) pilY2 373141..373623 (+) 483 WP_001046490.1 type IV pilin protein Machinery gene
  ABR2090_RS01775 (ABR2090_0356) pilE 373620..374045 (+) 426 WP_000788345.1 type IV pilin protein Machinery gene
  ABR2090_RS01780 (ABR2090_0357) rpsP 374192..374443 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABR2090_RS01785 (ABR2090_0358) rimM 374463..375011 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  ABR2090_RS01790 (ABR2090_0359) trmD 375057..375797 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABR2090_RS01795 (ABR2090_0360) rplS 376005..376373 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABR2090_RS01800 (ABR2090_0361) - 376426..377367 (-) 942 WP_104133477.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1268 a.a.        Molecular weight: 135878.74 Da        Isoelectric Point: 7.4603

>NTDB_id=1114811 ABR2090_RS01765 WP_000768961.1 369324..373130(+) (pilY1) [Acinetobacter baumannii isolate R2090]
MKLKLKNFKPNNLWYAVCSSSMIFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTSNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSADGDSRSGQILVAAAPLGDASTLNTMGSQRYKLKQAVASLTASGYTPSAHAYAEAAAYLM
GTTTLKNINLVDAPIYFSYVTYDRRGRVITNYHACTEWNTEGTICNSWDSSSLSNPPVISGLQQASCTANIGWQLLSGTC
YKKTGLITINNLDSGFNKSISGSKNTDQSQYNSPLPAVANRQSCDGQGIYFLSDGEPNKTTDTRSASIMSTALGSTFGAD
FNCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLSSRTQFDRGGDDLCSPN
QTTNAITAPGYGNGGFFSTQSAQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEYGYLRAFEPNPANTYLT
WRGNLKKYHVVLSGTNAGAFEANTGGLVYNATGAFRTGTKDYWNSSTYNDGGKVFFGGSYAKVPLPIAGQNETRDAEGNI
TKYYYAVQSKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPAAPPEGTNPFDTVANTASYVLGKFDPSTGQNILKAFPIS
LKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDDNGNLTSAREQSILYGTMEGGLHIVDAS
SGIEQMVFVPADILNDSVASKALVVGQSDASAPAHGMDGAWVSDPAYNITTVGSGSSAVSKVTAKQMNIYGGMRMGGSSY
YGLDVLSPTSPKLLFRIGADQTDYSRMGQSWSKPVLANIRYNGSIRRVLIVGGGYDQCYEKPNITLTDACFTNGKAKGNA
VYIIDAKTGQRLWWTSDTGSNTDNANMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRVDLNNNQTKTNSTYSSFGVR
VVRLANLATNDSTYDGTNDYTGGNAPRFYEPPTVTIHDYGIHTFITVGIASGDRSTPLDVYPLTGREGMTPTSALSGRPV
NNVYGIIDRDFVKKNLMSLTDNQLETKDITRTGLRKNPQILRTGETRVAQIFFPTTGVGKGGWYRSLSSTSDGTEKANNS
FRIKGGLKAFEEPMAITGNLIIPVYDPQGTGIVAADPCLPRVVGETDRQTYCLPFGACLNSDGSIDQNKENHSGFETQTG
TNCPVGASECNKNVIGSGIRSVTFVPTEDNPPMTNSCGKLKLSGNEQGTGQWQCTSHLVPTRWYERYR

Nucleotide


Download         Length: 3807 bp        

>NTDB_id=1114811 ABR2090_RS01765 WP_000768961.1 369324..373130(+) (pilY1) [Acinetobacter baumannii isolate R2090]
ATGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCGTCTGTTCAAGCTCAATGATATTCACATGGCT
GATGACAAGCTCTGTGGTGCAAGCAAGTGATTTACAAATTTATGCCTCACCTACAGCAGGTAAAAAAACAATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAGCAATAGTTATGGTGAAAACCGTTTGGCTATGCTTAAAAATGGTATGAATGCT
TTTTTAGCAAGTAACAACCCAGTTTTAAATGATACTCGTGTAGGATTGGGAAATTTCTCTGCAGATGGTGATAGTCGAAG
TGGGCAAATTTTGGTGGCTGCTGCTCCTTTAGGAGATGCAAGTACGTTAAATACAATGGGTTCTCAGCGTTATAAATTAA
AACAAGCAGTTGCTAGCTTAACTGCAAGTGGATATACCCCTTCAGCACATGCTTATGCAGAAGCCGCTGCTTATTTGATG
GGAACAACGACTTTAAAAAATATTAATTTGGTGGATGCACCTATATATTTTTCATATGTAACGTATGATCGACGAGGTCG
AGTAATAACGAATTATCATGCTTGTACAGAATGGAATACAGAAGGAACAATATGTAATAGTTGGGATAGTTCATCTTTAA
GTAATCCCCCCGTAATAAGTGGATTGCAACAAGCCTCATGTACTGCAAATATTGGGTGGCAATTGTTATCAGGTACCTGT
TATAAAAAAACAGGTTTAATAACAATTAATAATTTAGATAGCGGATTCAATAAATCTATTAGTGGATCTAAAAATACAGA
TCAAAGTCAATATAACTCTCCTTTGCCAGCGGTAGCTAATCGTCAAAGCTGTGATGGGCAGGGTATTTATTTTTTGTCAG
ATGGTGAGCCGAATAAAACCACAGATACACGTTCAGCAAGTATCATGTCGACTGCTTTAGGTAGTACTTTTGGAGCTGAT
TTTAATTGTTCTGGAGGTTTGTCTAACACGACAGCAGACTCTGGTTGGGCCTGTATGGGGGAGTTTGCAAAAAGATTATT
TGATAAAACAAAGAATCCTGCTGGAGTTTCTATTCAAACCGCATTTGTTGGTTTTGGTAGTGATTTTTCTAGTTTAAGTT
CTTCTGATGTAAAAAATGCCTGTCGTCTGAGTTCGAGAACCCAATTTGACCGTGGGGGGGATGATCTATGTTCGCCAAAT
CAAACTACAAATGCGATTACAGCACCTGGCTATGGGAATGGTGGCTTTTTTTCAACTCAAAGTGCGCAAGGTGTAACAGA
TAGTGTTATCGCATTTATTAATAACTTAGATAAAGTTCCTTTAGAACCCTTAACCACAGGTGCTATCTCTGTTCCTTATG
ATGCACTAAATCCTAAAAATTTACAGGAATATGGTTATTTACGAGCTTTTGAGCCAAATCCAGCTAACACGTACTTAACA
TGGCGTGGAAATTTAAAGAAATATCATGTTGTTTTATCGGGAACAAATGCTGGTGCTTTTGAAGCTAATACTGGTGGGTT
GGTTTACAACGCAACTGGGGCATTTAGAACGGGTACGAAAGATTATTGGAATAGCTCTACTTATAATGATGGAGGTAAAG
TCTTTTTTGGTGGTTCATATGCAAAAGTTCCTTTACCAATTGCTGGACAAAATGAAACACGTGATGCAGAAGGAAATATT
ACAAAATATTATTACGCAGTACAAAGTAAAATCCGCAACTTATTTACTGATGTTTCCGCCGTTGCAGCAGATGGTAGCTT
AACGAAAATTTCAACTTCTGGAACTAATTTGCTAAAAATTCCAGCTGCTCCACCAGAAGGAACTAATCCTTTTGATACGG
TGGCTAATACAGCAAGTTATGTTTTAGGTAAATTTGATCCATCAACTGGACAAAATATTTTAAAAGCTTTTCCTATAAGC
TTGAAATTAAAAATATTAAATTATTTAGGTTATTCAACAGATATTAGTGCAACAACTCTGCCTTCATCTTTGGTTACATC
GAATGAACCTTATTTATCGATGGGGGGAAGTATTCACTCTTTACCGGTTCAACTAACCTACAATGGAACACTAGATGATA
ATGGGAATTTAACATCTGCCCGAGAACAATCCATCCTCTATGGAACCATGGAAGGCGGGTTACATATTGTGGATGCTTCA
TCTGGTATTGAGCAAATGGTCTTTGTTCCTGCAGATATTTTAAATGATTCAGTTGCTTCCAAAGCTTTAGTTGTTGGTCA
AAGTGATGCTTCAGCTCCCGCTCATGGTATGGACGGAGCTTGGGTATCTGATCCAGCCTATAATATTACTACAGTGGGAA
GTGGTAGCTCGGCAGTATCAAAAGTAACTGCAAAGCAAATGAATATTTATGGCGGCATGCGTATGGGAGGAAGTAGCTAC
TACGGACTAGATGTATTAAGCCCTACTTCACCGAAACTGCTTTTTAGAATAGGGGCAGACCAGACTGACTATAGCCGTAT
GGGTCAAAGCTGGTCTAAACCCGTACTCGCGAACATCCGTTATAACGGTTCTATTAGACGTGTCCTGATTGTTGGCGGTG
GTTATGATCAGTGTTATGAAAAACCAAATATTACGTTGACTGACGCTTGCTTTACCAATGGAAAAGCAAAAGGAAATGCT
GTCTATATTATTGACGCAAAAACTGGTCAGCGTTTATGGTGGACAAGTGATACAGGCTCTAATACTGATAACGCCAATAT
GAAGCATAGTATTGTTAGCCGTATTAGTACTTTAGACCGTGATGCTGATGGCTTAGTCGACCATCTATATTTTGGAGATT
TAGGCGGACAAATTTTTCGCGTGGACCTTAATAATAATCAGACAAAAACCAATTCGACCTATAGCAGTTTTGGTGTCAGA
GTTGTGCGTTTAGCGAATTTAGCAACAAATGATTCAACTTATGATGGCACAAATGATTATACAGGTGGGAATGCTCCTCG
TTTTTATGAGCCTCCAACAGTAACGATCCACGATTATGGAATTCACACTTTTATTACAGTAGGCATTGCTTCAGGGGACC
GTAGTACACCTTTAGATGTTTACCCACTCACAGGTCGTGAAGGTATGACGCCTACAAGTGCATTAAGTGGACGTCCTGTA
AATAATGTATATGGAATTATTGATAGAGACTTTGTTAAAAAGAACTTAATGTCTTTAACTGATAATCAGCTTGAAACAAA
AGATATTACACGGACAGGCTTAAGAAAAAATCCACAAATTCTAAGAACAGGTGAAACAAGAGTAGCTCAAATTTTCTTCC
CAACTACAGGAGTAGGTAAAGGTGGTTGGTATCGCTCGCTTTCTAGTACGAGCGATGGTACAGAAAAAGCTAATAATAGT
TTTCGTATTAAAGGAGGACTCAAAGCTTTTGAGGAACCAATGGCAATTACGGGTAATTTAATTATTCCAGTTTATGACCC
TCAAGGAACGGGAATTGTTGCGGCAGATCCTTGCCTACCTCGTGTTGTGGGAGAAACAGACCGACAAACTTATTGTTTAC
CATTTGGAGCTTGTCTTAATTCTGATGGGTCAATCGATCAAAATAAAGAGAATCACAGTGGGTTTGAAACACAAACTGGT
ACTAATTGCCCAGTAGGGGCTTCTGAATGTAATAAAAACGTTATTGGCTCTGGTATTCGTAGCGTAACATTTGTACCAAC
GGAGGATAACCCACCTATGACTAATAGTTGTGGGAAATTAAAGCTGTCTGGTAATGAGCAAGGGACTGGACAGTGGCAAT
GTACGAGTCATTTAGTTCCTACGCGTTGGTATGAGCGTTATCGTTAA

Domains

Predicted by InterproScan.

von Willebrand factor type A domain (VWA_2)

(51-102)

Neisseria PilC beta-propeller domain (T4P_PilY1)

(699-948)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment