Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABR2090_RS01760 Genome accession   NZ_LN868200
Coordinates   368494..369312 (+) Length   272 a.a.
NCBI ID   WP_000149372.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate R2090     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363494..374312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2090_RS18690 - 364076..364206 (-) 131 Protein_331 hypothetical protein -
  ABR2090_RS01730 (ABR2090_0347) rpoZ 364245..364523 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABR2090_RS01735 (ABR2090_0348) gmk 364596..365225 (-) 630 WP_000015937.1 guanylate kinase -
  ABR2090_RS01740 (ABR2090_0349) ispH 365348..366298 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABR2090_RS01745 (ABR2090_0350) fimU 366468..366941 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABR2090_RS01750 (ABR2090_0351) pilV 366935..367495 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABR2090_RS01755 (ABR2090_0352) pilW 367496..368497 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABR2090_RS01760 (ABR2090_0353) pilX 368494..369312 (+) 819 WP_000149372.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABR2090_RS01765 (ABR2090_0354) pilY1 369324..373130 (+) 3807 WP_000768961.1 PilC/PilY family type IV pilus protein Machinery gene
  ABR2090_RS01770 (ABR2090_0355) pilY2 373141..373623 (+) 483 WP_001046490.1 type IV pilin protein Machinery gene
  ABR2090_RS01775 (ABR2090_0356) pilE 373620..374045 (+) 426 WP_000788345.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28905.76 Da        Isoelectric Point: 5.6905

>NTDB_id=1114810 ABR2090_RS01760 WP_000149372.1 368494..369312(+) (pilX) [Acinetobacter baumannii isolate R2090]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLENLQFDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1114810 ABR2090_RS01760 WP_000149372.1 368494..369312(+) (pilX) [Acinetobacter baumannii isolate R2090]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAAATC
TGCAATTTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment