Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSHI_RS02595 Genome accession   NZ_LN865164
Coordinates   558388..560604 (-) Length   738 a.a.
NCBI ID   WP_059183202.1    Uniprot ID   -
Organism   Pseudomonas sp. URMO17WK12:I11 isolate Yellow     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553388..565604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSHI_RS02560 (PYEL_05350) murB 553793..554812 (-) 1020 WP_049696351.1 UDP-N-acetylmuramate dehydrogenase -
  PSHI_RS02565 (PYEL_05360) - 554809..555273 (-) 465 WP_059183200.1 low molecular weight protein-tyrosine-phosphatase -
  PSHI_RS02570 (PYEL_05370) kdsB 555273..556034 (-) 762 WP_023533083.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSHI_RS02575 (PYEL_05380) - 556031..556216 (-) 186 WP_003247142.1 Trm112 family protein -
  PSHI_RS02580 (PYEL_05390) lpxK 556259..557260 (-) 1002 WP_059183201.1 tetraacyldisaccharide 4'-kinase -
  PSHI_RS02585 (PYEL_05400) - 557260..557694 (-) 435 WP_028687688.1 biopolymer transporter ExbD -
  PSHI_RS02590 (PYEL_05410) exbB 557691..558326 (-) 636 WP_023533075.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSHI_RS02595 (PYEL_05420) comA 558388..560604 (-) 2217 WP_059183202.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSHI_RS21685 (PYEL_05430) - 560747..561379 (+) 633 WP_115933573.1 DUF2062 domain-containing protein -
  PSHI_RS02600 (PYEL_05440) - 561263..562042 (-) 780 WP_023533108.1 ABC transporter permease -
  PSHI_RS02605 (PYEL_05450) - 562039..562971 (-) 933 WP_027914346.1 ABC transporter ATP-binding protein -
  PSHI_RS02610 (PYEL_05460) - 563117..563740 (-) 624 WP_059183203.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79524.22 Da        Isoelectric Point: 10.5902

>NTDB_id=1114781 PSHI_RS02595 WP_059183202.1 558388..560604(-) (comA) [Pseudomonas sp. URMO17WK12:I11 isolate Yellow]
MRTGMLALALGLLSLGLVPQLPSVGWLLLLAAGAVVSLFTRGWLLGVFLLGFCWACWSAKQAMDDRLAPGLEGRTLWLEG
RVVGLPARTAQGVRFDLEAAHSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPDGLLNPHGPDREAQLLARRVGASG
TVKAGQLLTPAPAGWRDALRERLLAVEANGRQAALVALVLGDGAGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAV
VAWLARWGLWPARVPWLPWACALAMSAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFHPLLLALVAVLLLEPL
AALLPGFWLSFGAVATLIYTFSARLGAWQPWQAWTRAQWVIAVGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGSAGEALLWLAGGLLDILFRALALVAQQRPAWVPPALPLWAWLLVCLGALLLLLPRGVPLRGLGAVMLVALW
APREPVPDGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPARGESDLGERVVLPTLRKLGVDSLDLLVVSHAHADHAGGAG
AIGRGLPIRRAIGGEPLEAVQLQPCVSGEQWEWDGVRFSLWRWADARTSNDRSCVLLVEASGERLLLAGDMEAGAERAWL
AAMDSPRIDWLQSPHHGSRSSSSEAFIRAAAPRGVLISRGRNNSFGHPHAQVVERYRRHGMTLHDTAVEGALHLVLGVQG
KVEGMRSQRRFWRDARGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1114781 PSHI_RS02595 WP_059183202.1 558388..560604(-) (comA) [Pseudomonas sp. URMO17WK12:I11 isolate Yellow]
ATGCGCACAGGGATGTTGGCGCTTGCACTCGGTCTGCTCAGCCTCGGCCTGGTGCCTCAACTGCCATCGGTCGGATGGCT
GTTATTGCTTGCGGCGGGCGCTGTCGTCAGTCTGTTCACCCGCGGGTGGTTACTGGGCGTGTTCCTGCTGGGCTTTTGCT
GGGCTTGCTGGTCTGCCAAGCAGGCCATGGATGATCGTCTGGCGCCAGGGCTCGAGGGTCGCACGTTATGGCTGGAAGGG
CGCGTGGTCGGCCTGCCGGCGCGCACCGCGCAAGGCGTTCGCTTCGACCTTGAGGCGGCGCATTCCCGGCGTGCCGAATT
GCCGCAACGCCTGCAATTGAGCTGGTTTGACGGGCCACCGCTGCGTGCCGGCGAGCAGTGGCGCCTGGCCGTGACCCTGC
AGCGGCCGGACGGGCTTTTGAACCCCCACGGGCCTGACCGTGAGGCGCAGTTGCTGGCACGTCGGGTCGGCGCCAGCGGA
ACGGTCAAAGCCGGGCAGTTACTGACGCCTGCGCCAGCCGGCTGGCGCGATGCGCTGCGCGAGCGGCTGCTGGCGGTCGA
GGCCAATGGTCGGCAAGCTGCGCTGGTGGCGCTGGTGCTTGGCGATGGGGCAGGCCTGGCACGCGAGGACTGGCAGGCGC
TACAGGCAACGGGCACCGTGCACCTGCTGGTGATTTCGGGCCAGCACATCGGTCTGGTGGCGGGTCTGCTCTACGCCGTG
GTCGCGTGGTTGGCCCGCTGGGGGCTGTGGCCGGCCCGGGTGCCGTGGCTGCCTTGGGCCTGTGCGCTGGCCATGAGTGC
GGCGCTGGCCTACGGCTGGCTGGCTGGGGCAGGGGTGCCAGTACAGCGCGCCTGTCTGATGCTGGCCGTGGTGCTGCTGT
GGCGGCTGCGCTTTCGTCATCTGGGTGCGTTTCACCCCTTGTTACTTGCGCTGGTTGCCGTACTGCTGTTGGAGCCATTG
GCAGCGCTGCTTCCAGGTTTCTGGTTGTCATTCGGCGCCGTGGCCACGCTCATCTACACCTTCAGTGCCCGGCTAGGGGC
TTGGCAACCCTGGCAGGCCTGGACGCGAGCGCAGTGGGTCATCGCCGTCGGGCTGCTCCCAGTGCTGCTGGCGGTGGGCT
TGCCGGTGAGCCTGAGTGCCCCGCTGGCCAACCTGGTGGCGGTGCCGTGGGTGAGCTTGGCGGTATTGCCGCTGGCGCTA
TTGGGCACCTTATTGCTGCCCTTGGGAAGCGCAGGTGAGGCCTTGCTGTGGCTGGCAGGCGGCCTGCTGGATATCTTGTT
TCGCGCCTTGGCGCTGGTCGCCCAGCAGCGCCCGGCATGGGTGCCTCCCGCATTGCCGTTGTGGGCCTGGCTGCTGGTCT
GCCTGGGTGCACTGCTGCTGTTGCTGCCACGGGGTGTGCCGCTGCGTGGGTTGGGTGCGGTGATGCTCGTGGCGCTCTGG
GCACCTCGCGAGCCTGTCCCGGATGGCCAAGTCGAGGTGTGGCAGCTGGACGTGGGCCAAGGCTTGGCGGTGTTGCTGCG
TACCCGGCAGCACAGTCTGCTGTATGACGCAGGTCCAGCCAGGGGTGAAAGCGATCTGGGTGAACGGGTCGTGTTGCCCA
CCTTGCGCAAGTTGGGGGTCGACAGCCTGGATCTGCTGGTGGTCAGTCACGCCCATGCCGATCACGCCGGCGGTGCAGGT
GCAATCGGGCGCGGGCTGCCGATCAGGCGGGCGATTGGCGGTGAGCCGCTGGAAGCGGTTCAGTTACAGCCTTGCGTCAG
TGGCGAGCAGTGGGAGTGGGACGGCGTGCGCTTTTCCCTGTGGCGCTGGGCGGATGCGCGCACCAGCAATGACCGCTCCT
GCGTGTTGCTGGTCGAGGCGTCGGGCGAGCGTTTGCTGCTGGCCGGGGACATGGAGGCGGGGGCCGAACGTGCGTGGCTG
GCTGCCATGGACTCACCACGCATCGACTGGCTGCAGTCGCCTCACCACGGCAGCCGCAGTTCGTCGAGCGAAGCCTTCAT
CCGCGCTGCAGCCCCGCGTGGGGTACTGATATCCCGCGGGCGCAACAACAGCTTCGGGCATCCCCATGCACAGGTGGTCG
AACGCTATCGCAGGCATGGCATGACCCTTCACGACACGGCGGTGGAGGGGGCGTTGCATCTGGTGCTCGGTGTGCAAGGA
AAGGTCGAGGGTATGCGCAGCCAGCGTCGGTTCTGGCGTGACGCCAGGGGTGGTTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-677)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.275

97.425

0.568
  comA Ralstonia pseudosolanacearum GMI1000

35.422

100

0.375

Multiple sequence alignment