Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSHI_RS02590 Genome accession   NZ_LN865164
Coordinates   557691..558326 (-) Length   211 a.a.
NCBI ID   WP_023533075.1    Uniprot ID   -
Organism   Pseudomonas sp. URMO17WK12:I11 isolate Yellow     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 552691..563326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSHI_RS02560 (PYEL_05350) murB 553793..554812 (-) 1020 WP_049696351.1 UDP-N-acetylmuramate dehydrogenase -
  PSHI_RS02565 (PYEL_05360) - 554809..555273 (-) 465 WP_059183200.1 low molecular weight protein-tyrosine-phosphatase -
  PSHI_RS02570 (PYEL_05370) kdsB 555273..556034 (-) 762 WP_023533083.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSHI_RS02575 (PYEL_05380) - 556031..556216 (-) 186 WP_003247142.1 Trm112 family protein -
  PSHI_RS02580 (PYEL_05390) lpxK 556259..557260 (-) 1002 WP_059183201.1 tetraacyldisaccharide 4'-kinase -
  PSHI_RS02585 (PYEL_05400) - 557260..557694 (-) 435 WP_028687688.1 biopolymer transporter ExbD -
  PSHI_RS02590 (PYEL_05410) exbB 557691..558326 (-) 636 WP_023533075.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSHI_RS02595 (PYEL_05420) comA 558388..560604 (-) 2217 WP_059183202.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSHI_RS21685 (PYEL_05430) - 560747..561379 (+) 633 WP_115933573.1 DUF2062 domain-containing protein -
  PSHI_RS02600 (PYEL_05440) - 561263..562042 (-) 780 WP_023533108.1 ABC transporter permease -
  PSHI_RS02605 (PYEL_05450) - 562039..562971 (-) 933 WP_027914346.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22847.12 Da        Isoelectric Point: 7.3616

>NTDB_id=1114780 PSHI_RS02590 WP_023533075.1 557691..558326(-) (exbB) [Pseudomonas sp. URMO17WK12:I11 isolate Yellow]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1114780 PSHI_RS02590 WP_023533075.1 557691..558326(-) (exbB) [Pseudomonas sp. URMO17WK12:I11 isolate Yellow]
GTGTGGGAATTGGTCAAGTCAGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCAGTCCGCCTCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGACTCGCCCCTGGGGGAGATCCTCGCGGCAGGGCTGGCCAAC
TCGCGTCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACGCTGGGCACCATTGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCGTTCATGGGGTCGCAGATGACCGCCAACGCCTCGGTGCTGGCGGGCGGTATTTCAAAGGCCCTGGTAACCACCGCA
GCCGGGCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAACTGGTGGAAGTGATTCAGGGGGACCGCGAGGTGGAAGTGGCGGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment