Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABCIP7010_RS16730 Genome accession   NZ_LN865143
Coordinates   3593456..3594196 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii isolate CIP70.10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3588456..3599196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCIP7010_RS16710 (ABCIP7010_3378) aroB 3588998..3590080 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ABCIP7010_RS16715 (ABCIP7010_3379) aroK 3590109..3590678 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABCIP7010_RS16720 (ABCIP7010_3380) pilQ 3590690..3592855 (-) 2166 WP_058207807.1 type IV pilus secretin PilQ family protein Machinery gene
  ABCIP7010_RS16725 (ABCIP7010_3381) pilP 3592918..3593445 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABCIP7010_RS16730 (ABCIP7010_3382) pilO 3593456..3594196 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABCIP7010_RS16735 (ABCIP7010_3383) pilN 3594193..3594834 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ABCIP7010_RS16740 (ABCIP7010_3384) pilM 3594834..3595892 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ABCIP7010_RS16745 (ABCIP7010_3385) ponA 3596055..3598610 (+) 2556 WP_031965526.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=1114773 ABCIP7010_RS16730 WP_000076101.1 3593456..3594196(-) (pilO) [Acinetobacter baumannii isolate CIP70.10]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1114773 ABCIP7010_RS16730 WP_000076101.1 3593456..3594196(-) (pilO) [Acinetobacter baumannii isolate CIP70.10]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment