Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABCIP7010_RS16735 Genome accession   NZ_LN865143
Coordinates   3594193..3594834 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii isolate CIP70.10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3589193..3599834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCIP7010_RS16715 (ABCIP7010_3379) aroK 3590109..3590678 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABCIP7010_RS16720 (ABCIP7010_3380) pilQ 3590690..3592855 (-) 2166 WP_058207807.1 type IV pilus secretin PilQ family protein Machinery gene
  ABCIP7010_RS16725 (ABCIP7010_3381) pilP 3592918..3593445 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABCIP7010_RS16730 (ABCIP7010_3382) pilO 3593456..3594196 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABCIP7010_RS16735 (ABCIP7010_3383) pilN 3594193..3594834 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ABCIP7010_RS16740 (ABCIP7010_3384) pilM 3594834..3595892 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ABCIP7010_RS16745 (ABCIP7010_3385) ponA 3596055..3598610 (+) 2556 WP_031965526.1 penicillin-binding protein PBP1a -
  ABCIP7010_RS16750 (ABCIP7010_3386) - 3598628..3599452 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  ABCIP7010_RS16755 (ABCIP7010_3387) - 3599455..3599787 (-) 333 WP_031965525.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=1114774 ABCIP7010_RS16735 WP_000201227.1 3594193..3594834(-) (pilN) [Acinetobacter baumannii isolate CIP70.10]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1114774 ABCIP7010_RS16735 WP_000201227.1 3594193..3594834(-) (pilN) [Acinetobacter baumannii isolate CIP70.10]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment