Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABCIP7010_RS16610 Genome accession   NZ_LN865143
Coordinates   3566565..3567383 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii isolate CIP70.10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3561565..3572383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCIP7010_RS16595 (ABCIP7010_3355) pilE 3561782..3562207 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  ABCIP7010_RS16600 (ABCIP7010_3356) pilY2 3562204..3562686 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  ABCIP7010_RS16605 (ABCIP7010_3357) pilY1 3562699..3566553 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  ABCIP7010_RS16610 (ABCIP7010_3358) pilX 3566565..3567383 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABCIP7010_RS16615 (ABCIP7010_3359) pilW 3567380..3568381 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABCIP7010_RS16620 (ABCIP7010_3360) pilV 3568382..3568942 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABCIP7010_RS16625 (ABCIP7010_3361) fimU 3568936..3569409 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABCIP7010_RS16630 (ABCIP7010_3362) ispH 3569579..3570529 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABCIP7010_RS16635 (ABCIP7010_3363) gmk 3570652..3571281 (+) 630 WP_000015937.1 guanylate kinase -
  ABCIP7010_RS16640 (ABCIP7010_3364) rpoZ 3571354..3571632 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABCIP7010_RS18905 - 3571671..3571801 (+) 131 Protein_3292 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=1114766 ABCIP7010_RS16610 WP_000149376.1 3566565..3567383(-) (pilX) [Acinetobacter baumannii isolate CIP70.10]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1114766 ABCIP7010_RS16610 WP_000149376.1 3566565..3567383(-) (pilX) [Acinetobacter baumannii isolate CIP70.10]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment