Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   ABCIP7010_RS13930 Genome accession   NZ_LN865143
Coordinates   3004128..3006560 (-) Length   810 a.a.
NCBI ID   WP_000472707.1    Uniprot ID   A0AAQ0VEX2
Organism   Acinetobacter baumannii isolate CIP70.10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2999128..3011560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCIP7010_RS13905 (ABCIP7010_2813) purM 2999451..3000521 (+) 1071 WP_000071984.1 phosphoribosylformylglycinamidine cyclo-ligase -
  ABCIP7010_RS13910 (ABCIP7010_2814) purN 3000518..3001147 (+) 630 WP_000975534.1 phosphoribosylglycinamide formyltransferase -
  ABCIP7010_RS13915 (ABCIP7010_2815) - 3001211..3002020 (-) 810 WP_000114071.1 alpha/beta fold hydrolase -
  ABCIP7010_RS13920 (ABCIP7010_2816) sppA 3002039..3003055 (-) 1017 WP_031965173.1 signal peptide peptidase SppA -
  ABCIP7010_RS13925 (ABCIP7010_2817) - 3003192..3004175 (+) 984 WP_001984639.1 lysophospholipid acyltransferase family protein -
  ABCIP7010_RS13930 (ABCIP7010_2818) comA/comEC 3004128..3006560 (-) 2433 WP_000472707.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABCIP7010_RS13935 (ABCIP7010_2819) lolD 3006645..3007331 (-) 687 WP_000049406.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ABCIP7010_RS13940 (ABCIP7010_2820) - 3007324..3008559 (-) 1236 WP_001984636.1 lipoprotein-releasing ABC transporter permease subunit -
  ABCIP7010_RS19300 - 3008697..3008777 (+) 81 Protein_2772 PilZ domain-containing protein -
  ABCIP7010_RS13945 (ABCIP7010_2821) - 3008807..3009715 (-) 909 WP_001140078.1 DMT family transporter -
  ABCIP7010_RS13950 (ABCIP7010_2822) - 3009726..3010211 (-) 486 WP_001985538.1 YaiI/YqxD family protein -
  ABCIP7010_RS13955 (ABCIP7010_2823) - 3010468..3011409 (+) 942 WP_000795877.1 hypothetical protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 92468.83 Da        Isoelectric Point: 8.7672

>NTDB_id=1114758 ABCIP7010_RS13930 WP_000472707.1 3004128..3006560(-) (comA/comEC) [Acinetobacter baumannii isolate CIP70.10]
MFKIILLGWIGGIALMGIDFPLIMQYEKVGEALLLLAFIFYLYKRPMFVDRPFLKAVFCLLCTTSLFMVGYHYAEKALIE
RLEQRETDTRNLDIIVYINRLSEEKDNKVQQTAQVLNFSKEPVNWLLYLKSNNQNLLKNNQNLELGHYYRISGKTRPAHS
YATPGAFDQEKWFIQRNIMSGFNVRYIEPLSLDEIYRLGYQQHLKEQQSFSNSFRLNIEKLRLTFRQILNSSSLQQKGLI
LALLTGDESLLSDETQLQFKQLGISHLLAISGPHVLIFAIMLSWACHQFISRYYPQIYLWKPKQVLMTVPCCLGVLIYTA
FVGFEIPALRTLLSALIFIGFLLLKQPIKPFTLLVYSASLLLLIDPFSVLSAGFWLSYGACFILLRIYQTIAQLPEQHFL
SLSSKMIFMGKVLIESQGKIFIALSPLTLLFFQQISWVAPLTNIIAVPIVGGVIVPLNIMAACAWFIVKPFGNMLFHFND
MLLSILLSCLGLLEKLSLPLQGISLTPLSLLAISCAIIILFLPKGILPKTWGILCCLPLVIMNKTSQQIQLNILDVGQGQ
AIFLQHPQQNWLIDTGGSYDEKIFSIGQNVVVPFLRQQGVRRLDHVVLSHLDQDHSGAFPIIQQEIPVKQLISNEQLPND
LKQPFQYCHQGQQWHYPELDIQILWPKEKDLAFVTSNQNQYSCVVYLQFKKVGGYQNFLIMGDAGWEAEYELLKDYPNLK
IDVLVLGHHGSKHSSAYDFLATLKPKLAIASAGFDNRYGHPSQQVIARLKALHIPLKSTLEQGTLSFVLENHKLVLHDRR
LDRLWLSRGF

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=1114758 ABCIP7010_RS13930 WP_000472707.1 3004128..3006560(-) (comA/comEC) [Acinetobacter baumannii isolate CIP70.10]
ATGTTTAAGATTATTCTATTGGGGTGGATTGGCGGTATTGCATTGATGGGAATAGATTTCCCTTTAATCATGCAATATGA
AAAAGTGGGCGAGGCTCTACTGTTACTTGCCTTTATTTTTTATCTTTATAAACGACCAATGTTCGTTGATCGACCATTTT
TAAAGGCAGTGTTTTGCTTATTATGTACAACAAGTCTTTTTATGGTTGGTTACCACTATGCTGAAAAAGCACTGATTGAA
CGATTAGAACAAAGAGAAACGGATACCCGAAATCTCGACATTATTGTCTATATAAACCGTTTAAGTGAAGAAAAAGATAA
TAAGGTTCAACAAACTGCACAAGTTCTAAATTTTTCTAAAGAACCGGTGAATTGGTTGCTATATTTAAAAAGTAATAATC
AAAATTTATTAAAGAATAATCAGAATCTTGAATTAGGTCACTATTATCGAATATCTGGAAAAACAAGACCTGCGCATAGT
TATGCCACCCCAGGAGCTTTTGATCAGGAAAAATGGTTTATTCAGCGAAATATTATGTCTGGTTTTAATGTGAGATATAT
TGAGCCTTTAAGTCTCGATGAAATCTATCGATTGGGCTATCAGCAACATTTAAAAGAACAACAGTCTTTTTCCAATAGTT
TTCGTTTAAATATAGAAAAACTTCGCTTAACTTTTAGGCAAATATTAAACAGCTCATCTCTACAGCAAAAGGGTTTAATT
TTAGCTTTGCTGACAGGTGATGAAAGCCTTTTATCAGATGAAACTCAACTACAGTTCAAACAATTAGGAATTAGTCATTT
ATTGGCGATCTCAGGCCCACATGTGCTCATTTTTGCCATTATGTTATCTTGGGCATGTCATCAATTTATCAGTCGTTATT
ATCCTCAAATTTACTTATGGAAACCGAAACAGGTTTTGATGACTGTACCATGCTGCCTTGGTGTTTTAATTTATACTGCA
TTTGTAGGTTTCGAAATTCCTGCACTACGAACATTATTATCAGCCCTTATATTTATTGGATTTCTATTATTAAAACAACC
TATTAAACCTTTTACATTACTCGTATATAGCGCAAGTCTACTGTTGCTAATTGACCCGTTTAGTGTGCTTTCTGCAGGTT
TTTGGCTGTCTTATGGGGCATGCTTTATTTTATTAAGAATTTACCAAACTATAGCGCAGCTACCTGAGCAACATTTTTTA
AGTCTGAGCTCAAAAATGATTTTTATGGGTAAGGTGTTAATTGAGTCTCAAGGCAAAATATTTATTGCATTGAGTCCCTT
AACCTTACTTTTCTTTCAACAAATTTCTTGGGTTGCTCCATTAACCAATATTATTGCCGTGCCTATTGTTGGTGGTGTTA
TTGTCCCTTTAAACATTATGGCTGCTTGCGCATGGTTTATAGTAAAACCGTTTGGAAATATGCTTTTTCATTTCAATGAT
ATGTTGCTCAGCATATTGCTGAGTTGTTTGGGCTTATTAGAAAAACTCTCTTTACCATTACAAGGTATAAGCTTGACGCC
ACTGTCTTTATTAGCGATTAGCTGTGCCATTATTATTTTATTTTTACCTAAAGGAATTCTGCCTAAAACTTGGGGAATAT
TATGCTGTTTACCCTTAGTTATTATGAACAAAACGAGTCAGCAAATTCAGCTTAATATTTTAGATGTTGGACAGGGGCAG
GCCATTTTTTTACAACATCCCCAACAAAACTGGTTAATTGACACAGGCGGTTCTTACGATGAAAAAATATTTAGTATTGG
ACAAAATGTTGTAGTGCCTTTTCTACGTCAGCAAGGCGTAAGACGATTAGATCATGTTGTGCTATCTCATCTTGATCAAG
ACCATAGTGGCGCGTTTCCTATTATTCAACAAGAGATTCCTGTAAAGCAGCTTATTTCGAATGAACAATTGCCAAATGAT
TTAAAGCAACCATTCCAATATTGCCATCAAGGGCAACAATGGCATTATCCTGAGTTAGATATTCAAATTTTATGGCCTAA
AGAAAAAGATCTGGCTTTTGTTACTTCTAACCAGAATCAATATTCTTGTGTTGTATATCTTCAATTTAAAAAAGTTGGTG
GTTACCAAAATTTTCTTATTATGGGCGATGCAGGATGGGAAGCTGAATACGAGTTATTAAAAGATTATCCTAACTTGAAG
ATAGATGTGTTGGTGCTAGGACATCATGGAAGTAAGCACAGTTCGGCTTATGATTTCTTGGCGACCTTAAAACCTAAACT
GGCCATTGCATCGGCAGGGTTTGATAACCGTTATGGCCATCCTAGCCAACAAGTTATAGCACGTTTAAAAGCTCTGCATA
TTCCGCTAAAAAGTACTTTGGAACAAGGGACCTTAAGTTTTGTGCTGGAAAACCACAAATTAGTTTTACATGACCGACGT
TTGGATAGGCTCTGGTTGAGTAGAGGTTTTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(243-521)

Domain of unknown function (DUF4131) (DUF4131)

(33-188)

Metallo-beta-lactamase superfamily (Lactamase_B)

(555-639)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

97.901

100

0.979
  comA/comEC Acinetobacter baumannii strain A118

97.654

100

0.977
  comA/comEC Acinetobacter baylyi ADP1

50.062

100

0.501

Multiple sequence alignment