Detailed information NTG1114724

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AWM52_RS21145
• Genome accession: NZ_LN854573
• Coordinates: 4655299..4657533 (+)
• Length: 744 a.a.
• NCBI ID: WP_059182334.1
• Uniprot ID: -
• Organism: Pseudomonas sp. URMO17WK12:I11 isolate Shine
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4650299..4662533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AWM52_RS21120 (PSHI_43500)	-	4651414..4652073 (+)	660	WP_059182332.1	transglutaminase family protein	-
AWM52_RS21125 (PSHI_43510)	-	4652117..4652740 (+)	624	WP_059182333.1	glutathione S-transferase	-
AWM52_RS21130 (PSHI_43520)	-	4652872..4653804 (+)	933	WP_027924020.1	ABC transporter ATP-binding protein	-
AWM52_RS21135 (PSHI_43530)	-	4653801..4654580 (+)	780	WP_027924021.1	ABC transporter permease	-
AWM52_RS21140 (PSHI_43540)	-	4654648..4655163 (-)	516	WP_027924022.1	DUF2062 domain-containing protein	-
AWM52_RS21145 (PSHI_43550)	comA	4655299..4657533 (+)	2235	WP_059182334.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AWM52_RS21150 (PSHI_43560)	exbB	4657632..4658267 (+)	636	WP_027924024.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AWM52_RS21155 (PSHI_43570)	-	4658264..4658695 (+)	432	WP_027924025.1	biopolymer transporter ExbD	-
AWM52_RS21160 (PSHI_43580)	lpxK	4658695..4659705 (+)	1011	WP_059182335.1	tetraacyldisaccharide 4'-kinase	-
AWM52_RS21165 (PSHI_43590)	-	4659731..4659916 (+)	186	WP_007945752.1	Trm112 family protein	-
AWM52_RS21170 (PSHI_43600)	kdsB	4659913..4660677 (+)	765	WP_027924027.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AWM52_RS21175 (PSHI_43610)	-	4660677..4661141 (+)	465	WP_059182336.1	low molecular weight protein-tyrosine-phosphatase	-
AWM52_RS21180 (PSHI_43620)	murB	4661138..4662157 (+)	1020	WP_059182337.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 82198.69 Da
• Isoelectric Point: 10.0638

>NTDB_id=1114724 AWM52_RS21145 WP_059182334.1 4655299..4657533(+) (comA) [Pseudomonas sp. URMO17WK12:I11 isolate Shine]
MRTGMLALALGLLALRFLPVLPPVWFWMWLPLSGLMLLPFRTYPLAFFLFGFSWACANAQWALDDRLLQKLDGETRWVEG
RVTGLAQNADGVVRFELTDSQSRRTKLPRRLRLAWYGGPPVSSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGAIG
TVKDGERLAEARWAWRDGIRQRLLAVDAQGRTAALTALVLGDGAGLSREEWQVLQDTGTVHLLVISGQHIGMLAGLVYLL
IAGLARFGLWPGRLPWLPWACGLAFSAALAYGLLAGFDVPVQRACVMIGLVLLWRLRFRHLGAWWPLLLALNGVLLLDPL
ASLQPGFWLSFAAVGVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPVVNLLAVPWISLVVLPPAL
LGTLLLLVPYVGEGLLWLAGGLIDGMFWALTMMAGHLPAWVPVAIPWWCWALGTLGAVLLLLPRGVPLRPLGWPLLLLLV
FPLRPLLPEGRADVWQLDVGQGLAILVRTRHHTLLYDAGPRFGDLDMGERVVLPSLRKLGVRGLDLMLISHADADHAGGA
RAVSNGLPVKQILSGDPEGLPDALQAQGCESGRQWTWDGVNFQLWQWTSAQDRNQKSCVLQIEASGERLLLTGDIDTAAE
RVLLESPLAVATDWLQSPHHGSRSSSSMVLLNVLQPKAVLISRGQGNSFGHPHPTVVARYQKRGMAIYDSAEHGAIHLQL
GCFQPPWTMRLDRRFWREPPPVNK

Nucleotide

• Length: 2235 bp

>NTDB_id=1114724 AWM52_RS21145 WP_059182334.1 4655299..4657533(+) (comA) [Pseudomonas sp. URMO17WK12:I11 isolate Shine]
ATGCGCACAGGGATGTTGGCGCTCGCGCTGGGTTTGTTGGCCCTGCGTTTTTTGCCGGTTTTACCGCCGGTCTGGTTTTG
GATGTGGCTGCCACTGTCGGGTTTGATGCTGCTGCCGTTTCGGACGTATCCGTTGGCGTTTTTCCTGTTCGGCTTCAGTT
GGGCGTGCGCGAATGCGCAGTGGGCGCTGGATGATCGGCTGCTACAAAAACTCGACGGCGAAACCCGTTGGGTTGAAGGG
CGGGTGACGGGGCTGGCGCAAAATGCCGACGGCGTGGTGCGATTCGAACTGACGGACAGTCAATCCAGGCGAACGAAGCT
GCCCAGGCGTTTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTCAGCAGCGGCGAACGCTGGCGACTGGCGGTCAAATTGA
AGCGTCCTGCCGGGCTGCTCAATCCGCATGCCTTCGATTACGACGCCTGGCTGCTGGCTCAACGCATCGGTGCGATCGGC
ACGGTCAAGGACGGTGAGCGACTCGCCGAAGCCCGATGGGCCTGGCGTGACGGTATCCGCCAGCGTTTACTCGCGGTCGA
TGCCCAAGGCCGAACCGCCGCGTTGACCGCGCTGGTACTGGGCGATGGCGCCGGGCTGAGCCGTGAGGAGTGGCAGGTGC
TGCAAGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGAATGTTGGCGGGGCTGGTCTACCTGCTG
ATCGCCGGGTTGGCGCGGTTTGGCCTCTGGCCAGGCCGTTTACCGTGGCTGCCATGGGCCTGCGGGCTGGCGTTCTCGGC
GGCGCTGGCTTACGGGCTGCTGGCCGGCTTCGACGTTCCGGTGCAACGCGCCTGCGTGATGATCGGTCTGGTGCTGCTAT
GGCGGCTGCGCTTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTCAATGGTGTTTTGCTGCTGGATCCGTTG
GCCAGCCTGCAGCCGGGTTTCTGGTTGTCCTTCGCCGCCGTGGGGGTGTTGATCTTCACCTTTGGCGGGCGGCTGGGCCC
CTGGCGATGGTGGCAAACCTGGACGCGGGCTCAATGGCTGATCGCGATCGGCCTGTGCCCGTTGCTGCTGGTGCTCGGCT
TGCCGATCAGCCTCAGCGGGCCGGTGGTCAATCTGCTGGCAGTGCCCTGGATCAGCCTGGTGGTCTTACCGCCCGCCTTG
CTCGGGACATTGTTGTTGCTCGTCCCTTATGTGGGCGAAGGCTTGCTATGGCTGGCGGGCGGTTTGATCGACGGGATGTT
CTGGGCGCTGACAATGATGGCCGGGCATTTGCCGGCGTGGGTGCCGGTGGCGATCCCGTGGTGGTGTTGGGCACTGGGTA
CATTGGGCGCCGTCCTGCTGTTGTTGCCGCGAGGCGTGCCTCTACGCCCATTAGGATGGCCGCTGCTGTTGTTGCTGGTG
TTCCCGCTTCGGCCGTTGTTGCCGGAAGGCAGGGCCGATGTCTGGCAACTGGACGTCGGTCAAGGTTTGGCCATTCTGGT
GCGGACCCGACATCACACGCTGCTGTATGACGCAGGGCCGCGTTTCGGCGATCTGGACATGGGGGAGCGGGTGGTGCTGC
CGTCGTTACGCAAACTCGGGGTAAGGGGCCTCGACCTGATGCTGATCAGTCACGCCGATGCCGATCACGCAGGCGGAGCG
CGAGCCGTGAGCAATGGCCTGCCGGTCAAGCAGATACTCAGTGGCGATCCCGAGGGTTTACCTGACGCACTGCAAGCCCA
AGGCTGTGAAAGTGGCCGGCAATGGACCTGGGACGGTGTGAATTTCCAATTGTGGCAATGGACGTCTGCCCAGGACCGCA
ATCAGAAATCCTGCGTCTTGCAAATAGAAGCCAGCGGCGAGCGACTGTTGCTGACCGGTGATATCGACACCGCTGCCGAA
CGGGTCTTGTTGGAGAGCCCGCTGGCGGTGGCCACCGATTGGTTGCAGTCACCGCATCACGGCAGCCGCAGTTCCTCGTC
AATGGTTCTTTTGAACGTGTTGCAACCCAAGGCCGTATTGATCTCTCGTGGCCAGGGCAATTCCTTTGGCCATCCGCACC
CCACGGTCGTGGCGCGTTATCAAAAACGCGGCATGGCGATTTACGACAGTGCCGAGCACGGTGCCATTCATCTGCAACTG
GGGTGTTTCCAGCCACCGTGGACGATGCGTCTGGACCGGCGTTTCTGGCGCGAACCACCGCCGGTCAATAAATAG

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-678)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.083	95.027	0.599
comA	Ralstonia pseudosolanacearum GMI1000	34.113	100	0.372