Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AWM52_RS21150 Genome accession   NZ_LN854573
Coordinates   4657632..4658267 (+) Length   211 a.a.
NCBI ID   WP_027924024.1    Uniprot ID   -
Organism   Pseudomonas sp. URMO17WK12:I11 isolate Shine     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4652632..4663267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM52_RS21130 (PSHI_43520) - 4652872..4653804 (+) 933 WP_027924020.1 ABC transporter ATP-binding protein -
  AWM52_RS21135 (PSHI_43530) - 4653801..4654580 (+) 780 WP_027924021.1 ABC transporter permease -
  AWM52_RS21140 (PSHI_43540) - 4654648..4655163 (-) 516 WP_027924022.1 DUF2062 domain-containing protein -
  AWM52_RS21145 (PSHI_43550) comA 4655299..4657533 (+) 2235 WP_059182334.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AWM52_RS21150 (PSHI_43560) exbB 4657632..4658267 (+) 636 WP_027924024.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AWM52_RS21155 (PSHI_43570) - 4658264..4658695 (+) 432 WP_027924025.1 biopolymer transporter ExbD -
  AWM52_RS21160 (PSHI_43580) lpxK 4658695..4659705 (+) 1011 WP_059182335.1 tetraacyldisaccharide 4'-kinase -
  AWM52_RS21165 (PSHI_43590) - 4659731..4659916 (+) 186 WP_007945752.1 Trm112 family protein -
  AWM52_RS21170 (PSHI_43600) kdsB 4659913..4660677 (+) 765 WP_027924027.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AWM52_RS21175 (PSHI_43610) - 4660677..4661141 (+) 465 WP_059182336.1 low molecular weight protein-tyrosine-phosphatase -
  AWM52_RS21180 (PSHI_43620) murB 4661138..4662157 (+) 1020 WP_059182337.1 UDP-N-acetylmuramate dehydrogenase -
  AWM52_RS21185 (PSHI_43630) - 4662398..4662868 (+) 471 WP_027924030.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22971.16 Da        Isoelectric Point: 6.8771

>NTDB_id=1114725 AWM52_RS21150 WP_027924024.1 4657632..4658267(+) (exbB) [Pseudomonas sp. URMO17WK12:I11 isolate Shine]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLTEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1114725 AWM52_RS21150 WP_027924024.1 4657632..4658267(+) (exbB) [Pseudomonas sp. URMO17WK12:I11 isolate Shine]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCCATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTGACCCCCGAGCACTTGCTCGGCCAGGTCTGGGTCTGGATCAAAGACA
AACAGCTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCGCCGTTGGGCGAAATCCTGGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAACTGGAGCGTTACAT
CAACGCCTTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGGTTGTTGGGGACGGTGCTGGGTATGATCGATATCTTCA
GCGCGTTCATGGGCACAGGCATGGGCACCAACGCCGCGGTGCTCGCCGGCGGCATTTCCAAAGCCTTGATCACCACGGCT
GCGGGCCTGATGGTTGGTATCCCGTCGGTGTTCTTCCATCGTTTCCTGCAACGCCGGATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAGGTGGTGCAGGGTGACCGTGATGTGGACCTGACCGAGGGCCGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment