Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AWM52_RS17845 | Genome accession | NZ_LN854573 |
| Coordinates | 3933643..3934515 (-) | Length | 290 a.a. |
| NCBI ID | WP_059182143.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. URMO17WK12:I11 isolate Shine | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3928643..3939515
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AWM52_RS17805 (PSHI_36690) | - | 3929886..3930059 (-) | 174 | WP_032833555.1 | DUF3094 domain-containing protein | - |
| AWM52_RS17810 (PSHI_36700) | - | 3930110..3930637 (-) | 528 | WP_059182142.1 | MOSC domain-containing protein | - |
| AWM52_RS17815 (PSHI_36710) | - | 3930634..3931260 (-) | 627 | WP_027924174.1 | DUF1780 domain-containing protein | - |
| AWM52_RS17820 (PSHI_36720) | - | 3931389..3931856 (+) | 468 | WP_027924173.1 | hypothetical protein | - |
| AWM52_RS17825 (PSHI_36730) | - | 3931853..3932542 (+) | 690 | WP_027924172.1 | energy-coupling factor ABC transporter permease | - |
| AWM52_RS17830 (PSHI_36740) | - | 3932606..3932821 (+) | 216 | WP_027924171.1 | hypothetical protein | - |
| AWM52_RS17835 (PSHI_36750) | yacG | 3932826..3933026 (-) | 201 | WP_027924170.1 | DNA gyrase inhibitor YacG | - |
| AWM52_RS17840 (PSHI_36760) | coaE | 3933023..3933646 (-) | 624 | WP_027924169.1 | dephospho-CoA kinase | - |
| AWM52_RS17845 (PSHI_36770) | pilD | 3933643..3934515 (-) | 873 | WP_059182143.1 | A24 family peptidase | Machinery gene |
| AWM52_RS17850 (PSHI_36780) | pilC | 3934517..3935734 (-) | 1218 | WP_059182144.1 | type II secretion system F family protein | Machinery gene |
| AWM52_RS17855 (PSHI_36790) | pilB | 3935737..3937437 (-) | 1701 | WP_059182145.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AWM52_RS17860 (PSHI_36800) | - | 3937663..3938085 (+) | 423 | WP_027924165.1 | pilin | - |
| AWM52_RS17865 (PSHI_36820) | - | 3938396..3938749 (+) | 354 | WP_027924164.1 | BON domain-containing protein | - |
| AWM52_RS17870 (PSHI_36830) | - | 3938931..3939227 (-) | 297 | WP_027924163.1 | DUF2845 domain-containing protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32132.40 Da Isoelectric Point: 8.0004
>NTDB_id=1114719 AWM52_RS17845 WP_059182143.1 3933643..3934515(-) (pilD) [Pseudomonas sp. URMO17WK12:I11 isolate Shine]
MPLTEILTVYPAFFVVIALAVGLVVGSFLNVVVWRLPKMLQREWRLQAHDVLGVPPEVPGPTYNLMLPHSHCPHCDHRIR
AWENIPVLSYLFLRGRCSSCAAPISKRYPLTELACGLLSAFIAWHFGFGWPACTVLILTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGVFVSLHEALWGAVAGYMALWSVYWLFKLLTGKDGIGHGDFKLLAMLGAWGGWQILPLTILLASLVG
ALLGVILLRLRDAKTSSPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
MPLTEILTVYPAFFVVIALAVGLVVGSFLNVVVWRLPKMLQREWRLQAHDVLGVPPEVPGPTYNLMLPHSHCPHCDHRIR
AWENIPVLSYLFLRGRCSSCAAPISKRYPLTELACGLLSAFIAWHFGFGWPACTVLILTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGVFVSLHEALWGAVAGYMALWSVYWLFKLLTGKDGIGHGDFKLLAMLGAWGGWQILPLTILLASLVG
ALLGVILLRLRDAKTSSPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=1114719 AWM52_RS17845 WP_059182143.1 3933643..3934515(-) (pilD) [Pseudomonas sp. URMO17WK12:I11 isolate Shine]
ATGCCATTGACTGAAATCCTCACGGTTTACCCGGCGTTTTTCGTGGTCATCGCCTTGGCGGTGGGCCTGGTGGTGGGCAG
TTTTCTCAATGTGGTGGTCTGGCGCCTGCCAAAAATGCTCCAGCGCGAATGGCGACTGCAAGCCCATGACGTGCTGGGCG
TGCCTCCCGAAGTGCCGGGCCCGACCTACAACTTGATGCTGCCCCACTCCCACTGCCCGCACTGCGACCATCGGATTCGC
GCGTGGGAAAACATTCCGGTGCTCAGTTACCTGTTTTTACGCGGTCGCTGCTCAAGCTGCGCCGCACCGATCAGCAAGCG
CTATCCGCTGACCGAACTGGCGTGCGGTCTGCTTTCGGCGTTTATCGCCTGGCATTTCGGTTTCGGCTGGCCGGCTTGCA
CGGTGCTGATCCTGACCTGGGGCTTGCTGGCGATGAGTCTGATCGACGCCGAGCACCAACTGCTGCCGGATGTGCTGGTA
TTGCCGCTGCTTTGGCTGGGGTTGATCGTCAACAGCTTCGGCGTTTTCGTCTCACTGCATGAAGCGCTCTGGGGGGCAGT
GGCCGGGTATATGGCATTGTGGTCGGTGTATTGGCTGTTCAAACTGCTCACCGGCAAGGACGGGATCGGCCATGGCGATT
TCAAGTTACTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATTTTGCCACTGACGATCCTCCTGGCATCGCTGGTAGGC
GCCCTTCTCGGGGTGATTTTGTTGCGCCTGCGCGACGCGAAAACCTCGTCGCCAATCCCCTTCGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCATTGACTGAAATCCTCACGGTTTACCCGGCGTTTTTCGTGGTCATCGCCTTGGCGGTGGGCCTGGTGGTGGGCAG
TTTTCTCAATGTGGTGGTCTGGCGCCTGCCAAAAATGCTCCAGCGCGAATGGCGACTGCAAGCCCATGACGTGCTGGGCG
TGCCTCCCGAAGTGCCGGGCCCGACCTACAACTTGATGCTGCCCCACTCCCACTGCCCGCACTGCGACCATCGGATTCGC
GCGTGGGAAAACATTCCGGTGCTCAGTTACCTGTTTTTACGCGGTCGCTGCTCAAGCTGCGCCGCACCGATCAGCAAGCG
CTATCCGCTGACCGAACTGGCGTGCGGTCTGCTTTCGGCGTTTATCGCCTGGCATTTCGGTTTCGGCTGGCCGGCTTGCA
CGGTGCTGATCCTGACCTGGGGCTTGCTGGCGATGAGTCTGATCGACGCCGAGCACCAACTGCTGCCGGATGTGCTGGTA
TTGCCGCTGCTTTGGCTGGGGTTGATCGTCAACAGCTTCGGCGTTTTCGTCTCACTGCATGAAGCGCTCTGGGGGGCAGT
GGCCGGGTATATGGCATTGTGGTCGGTGTATTGGCTGTTCAAACTGCTCACCGGCAAGGACGGGATCGGCCATGGCGATT
TCAAGTTACTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATTTTGCCACTGACGATCCTCCTGGCATCGCTGGTAGGC
GCCCTTCTCGGGGTGATTTTGTTGCGCCTGCGCGACGCGAAAACCTCGTCGCCAATCCCCTTCGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.521 |
97.931 |
0.524 |
| pilD | Vibrio campbellii strain DS40M4 |
52.128 |
97.241 |
0.507 |
| pilD | Acinetobacter baumannii D1279779 |
48.727 |
94.828 |
0.462 |
| pilD | Acinetobacter nosocomialis M2 |
48 |
94.828 |
0.455 |
| pilD | Neisseria gonorrhoeae MS11 |
49.248 |
91.724 |
0.452 |