Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AWM52_RS17740 Genome accession   NZ_LN854573
Coordinates   3916242..3917582 (-) Length   446 a.a.
NCBI ID   WP_059182138.1    Uniprot ID   -
Organism   Pseudomonas sp. URMO17WK12:I11 isolate Shine     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3911242..3922582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM52_RS17725 (PSHI_36520) - 3911505..3914597 (+) 3093 WP_059182136.1 PilC/PilY family type IV pilus protein -
  AWM52_RS17730 (PSHI_36530) - 3914612..3915013 (+) 402 WP_027924186.1 type IV pilin protein -
  AWM52_RS17735 (PSHI_36540) thiO 3915069..3916169 (+) 1101 WP_059182137.1 glycine oxidase ThiO -
  AWM52_RS17740 (PSHI_36550) pilR 3916242..3917582 (-) 1341 WP_059182138.1 sigma-54 dependent transcriptional regulator Regulator
  AWM52_RS17745 (PSHI_36560) pilS 3917585..3919174 (-) 1590 WP_059183053.1 ATP-binding protein Regulator
  AWM52_RS29085 (PSHI_36570) - 3919164..3919397 (-) 234 WP_027924182.1 PP0621 family protein -
  AWM52_RS17750 (PSHI_36580) - 3919520..3920542 (-) 1023 WP_027924181.1 outer membrane protein assembly factor BamD -
  AWM52_RS17755 (PSHI_36590) rluD 3920694..3921656 (+) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AWM52_RS17760 (PSHI_36600) pgeF 3921653..3922405 (+) 753 WP_059182139.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49924.42 Da        Isoelectric Point: 6.8263

>NTDB_id=1114717 AWM52_RS17740 WP_059182138.1 3916242..3917582(-) (pilR) [Pseudomonas sp. URMO17WK12:I11 isolate Shine]
MCPRPKVLIVDDEPDIRELLEITLGRMKLDTFSARNLVDAQALLARETFDLCLTDMRLPDGTGLELVQHIQKRYAQVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPADASTAIDRRLLGNSLPMRNLRKHIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRAHHPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKRGLFQAAQGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSIGEQQETVVDVRILCATHKDLEAEIVAERFRQDLYYRLNVIELRVPPLRERRDDIEALASH
VLKRLAADSGRPPATLHPLALDALKSYRFPGNVRELENVLERAHTLCENKQIETSDLRLADGNCAAEGGVPDLTQIDNLE
DYLENIERKVILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1114717 AWM52_RS17740 WP_059182138.1 3916242..3917582(-) (pilR) [Pseudomonas sp. URMO17WK12:I11 isolate Shine]
ATGTGCCCACGGCCCAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGATACCTTCAGTGCCCGCAACCTGGTCGACGCCCAAGCCTTGCTGGCCCGGGAAACCTTCGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGCCTTGAGCTCGTGCAACACATCCAGAAGCGTTACGCACAGGTGCCGGTGGCG
ATGATCACGGCCTACGGCAGCCTTGAAACAGCCATTAACGCACTCAAGGCCGGCGCCTTCGACTTCCTGACCAAACCGGT
CGACCTCACTCGCCTGCGGGAACTGGTCACCAGCGCCCTGCGCCTGCCTGCTCCAGCCGACGCCAGTACGGCGATTGATC
GCCGGCTGCTGGGCAACTCGCTGCCCATGCGTAACCTGCGCAAACACATCGACAAACTCGCCCGCAGCCAGGCGCCGGTG
TACATCAGCGGCGAGTCCGGCAGCGGCAAGGAGTTGGTTGCAAGACTGATCCACGAACAAGGCCCGCGAGCTCATCACCC
CTTCGTCCCGGTCAACTGTGGGGCGATTCCGTCAGAGCTGATGGAAAGCGAGTTCTTCGGGCATCGCAAAGGCAGTTTCA
GCGGCGCCGTCGAAGACAAGCGCGGACTGTTCCAGGCCGCCCAGGGCGGCACGCTGTTCCTCGATGAAGTCGCGGATTTG
CCGTTGGCGATGCAGGTCAAACTGCTGCGTGCGATTCAGGAAAAAGCCGTGCGCAGTATTGGCGAGCAACAGGAAACCGT
GGTCGATGTGCGCATCCTTTGCGCCACCCACAAAGACCTTGAGGCCGAAATCGTCGCCGAGCGTTTTCGTCAGGATTTGT
ACTACCGGCTCAACGTGATCGAACTGCGGGTTCCGCCCTTGCGCGAACGCCGTGACGACATCGAGGCATTGGCCAGCCAT
GTGCTCAAGCGCTTGGCGGCCGACAGCGGCCGACCTCCCGCGACACTCCATCCGCTCGCCCTGGATGCGCTCAAAAGCTA
TCGCTTTCCCGGCAATGTGCGGGAACTGGAGAACGTACTCGAACGGGCTCACACCTTGTGCGAGAACAAGCAGATCGAAA
CCAGCGATTTACGATTGGCCGACGGTAATTGCGCGGCAGAAGGCGGGGTGCCGGACCTGACGCAGATCGACAATCTGGAA
GACTATCTGGAAAACATCGAGCGCAAAGTCATCCTCCAGGCGCTGGAGGAAACCCGCTGGAACCGTACGGCGGCGGCTCA
GCGGTTGAATTTGTCGTTCAGGTCGATGCGTTACAGGCTCAAAAAACTGGGCCTGGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

99.327

0.776
  pilR Acinetobacter baumannii strain A118

48.812

100

0.507

Multiple sequence alignment