Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABBFA_RS01780 Genome accession   NZ_CP001172
Coordinates   371944..372762 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii AB307-0294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366944..377762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABBFA_RS01745 - 367526..367656 (-) 131 Protein_330 hypothetical protein -
  ABBFA_RS01750 (ABBFA_00339) rpoZ 367695..367973 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABBFA_RS01755 (ABBFA_00340) gmk 368046..368675 (-) 630 WP_000015937.1 guanylate kinase -
  ABBFA_RS01760 (ABBFA_00341) ispH 368798..369748 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABBFA_RS01765 (ABBFA_00342) fimU 369918..370391 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABBFA_RS01770 (ABBFA_00343) pilV 370385..370945 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABBFA_RS01775 (ABBFA_00344) pilW 370946..371947 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABBFA_RS01780 (ABBFA_00345) pilX 371944..372762 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABBFA_RS01785 (ABBFA_00346) pilY1 372774..376628 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  ABBFA_RS01790 (ABBFA_00347) pilY2 376639..377121 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  ABBFA_RS01795 (ABBFA_00348) pilE 377118..377543 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=111434 ABBFA_RS01780 WP_000149374.1 371944..372762(+) (pilX) [Acinetobacter baumannii AB307-0294]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=111434 ABBFA_RS01780 WP_000149374.1 371944..372762(+) (pilX) [Acinetobacter baumannii AB307-0294]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment