Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABBFA_RS01655 Genome accession   NZ_CP001172
Coordinates   345070..345810 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii AB307-0294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340070..350810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABBFA_RS01640 (ABBFA_00318) ponA 340657..343212 (-) 2556 WP_000736663.1 penicillin-binding protein PBP1a -
  ABBFA_RS01645 (ABBFA_00319) pilM 343374..344432 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ABBFA_RS01650 (ABBFA_00320) pilN 344432..345073 (+) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  ABBFA_RS01655 (ABBFA_00321) pilO 345070..345810 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABBFA_RS01660 (ABBFA_00322) pilP 345821..346348 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  ABBFA_RS01665 (ABBFA_00323) pilQ 346411..348576 (+) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  ABBFA_RS01670 (ABBFA_00324) aroK 348588..349157 (+) 570 WP_000643712.1 shikimate kinase AroK -
  ABBFA_RS01675 (ABBFA_00325) aroB 349186..350268 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=111428 ABBFA_RS01655 WP_000076101.1 345070..345810(+) (pilO) [Acinetobacter baumannii AB307-0294]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=111428 ABBFA_RS01655 WP_000076101.1 345070..345810(+) (pilO) [Acinetobacter baumannii AB307-0294]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCAAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGAGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAGGATAACAAGTCTGATATTCCTGTACTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment