Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LACPI_RS02070 Genome accession   NZ_LN774769
Coordinates   402383..402889 (+) Length   168 a.a.
NCBI ID   WP_047914855.1    Uniprot ID   A0A0D6DVT4
Organism   Lactococcus piscium MKFS47     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 397383..407889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LACPI_RS02040 (LACPI_0389) - 397466..397831 (+) 366 WP_167594956.1 glyoxalase -
  LACPI_RS02045 (LACPI_0390) - 398093..398497 (+) 405 WP_047914850.1 DUF2177 family protein -
  LACPI_RS02050 (LACPI_0391) - 398503..400311 (+) 1809 WP_047914851.1 DegV family protein -
  LACPI_RS02055 (LACPI_0392) - 400308..401075 (+) 768 WP_047914852.1 DUF1295 domain-containing protein -
  LACPI_RS02060 (LACPI_0393) - 401143..401775 (-) 633 WP_047914853.1 rhomboid family intramembrane serine protease -
  LACPI_RS02065 (LACPI_0394) rpsF 402047..402346 (+) 300 WP_047914854.1 30S ribosomal protein S6 -
  LACPI_RS02070 (LACPI_0395) ssb 402383..402889 (+) 507 WP_047914855.1 single-stranded DNA-binding protein Machinery gene
  LACPI_RS02075 (LACPI_0396) rpsR 402946..403191 (+) 246 WP_047914856.1 30S ribosomal protein S18 -
  LACPI_RS02080 (LACPI_0397) - 403310..403621 (-) 312 WP_047914857.1 DUF960 domain-containing protein -
  LACPI_RS02085 (LACPI_0398) - 403709..404416 (+) 708 WP_047914858.1 pseudouridine synthase -
  LACPI_RS02090 (LACPI_0399) recX 404413..405207 (-) 795 WP_047914859.1 recombination regulator RecX -
  LACPI_RS02095 (LACPI_0400) - 405282..406058 (-) 777 WP_047914860.1 MerR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18189.00 Da        Isoelectric Point: 4.8779

>NTDB_id=1113973 LACPI_RS02070 WP_047914855.1 402383..402889(+) (ssb) [Lactococcus piscium MKFS47]
MINNVVLVGRLTKDVELRYTPANQAVATFTLAVNRTFKNANGEREADFINIVIWRQAAENLANWAKKGALLGVTGRIQTR
NYENAQGQRVYVTEVVADNFQMLESRSARDNGQGGGGYTPSSQPNTANFGGNQSSQPQASAATPDFGRDSDPFSGGTPMN
LSDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1113973 LACPI_RS02070 WP_047914855.1 402383..402889(+) (ssb) [Lactococcus piscium MKFS47]
ATGATTAATAATGTTGTTTTAGTAGGTCGGTTGACCAAAGACGTTGAACTTCGTTACACACCAGCTAACCAAGCAGTGGC
GACATTTACGCTTGCCGTAAATCGTACCTTTAAAAATGCAAATGGTGAGCGTGAAGCGGATTTCATTAATATCGTCATTT
GGCGTCAAGCTGCGGAAAATCTAGCAAATTGGGCTAAAAAAGGTGCACTTTTGGGTGTTACTGGACGTATCCAAACAAGA
AATTATGAGAATGCACAAGGTCAACGTGTTTACGTAACCGAAGTTGTCGCCGATAATTTCCAAATGCTAGAAAGCCGTTC
AGCTCGCGACAATGGTCAAGGTGGCGGTGGGTATACACCATCATCACAACCAAACACTGCAAACTTCGGTGGCAATCAAT
CATCACAACCACAAGCATCAGCTGCAACACCTGACTTTGGCCGCGATAGCGATCCATTTTCAGGTGGGACACCGATGAAC
TTGAGTGATGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6DVT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.742

100

0.601
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.818

100

0.595
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.095

0.381

Multiple sequence alignment