Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   LHA_RS03885 Genome accession   NZ_LN681225
Coordinates   839156..839815 (+) Length   219 a.a.
NCBI ID   WP_045105371.1    Uniprot ID   A0A0A8UM08
Organism   Legionella hackeliae strain ATCC 35250     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 834156..844815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA_RS03860 (LHA_0825) - 835238..835543 (-) 306 WP_045105367.1 hypothetical protein -
  LHA_RS03865 (LHA_0826) - 835702..836358 (+) 657 WP_045105368.1 hypothetical protein -
  LHA_RS03870 (LHA_0827) comFC 836345..837040 (-) 696 WP_407927331.1 ComF family protein Machinery gene
  LHA_RS03875 (LHA_0828) bioC 837078..837944 (+) 867 WP_045105369.1 malonyl-ACP O-methyltransferase BioC -
  LHA_RS03880 (LHA_0829) phhA 838086..838904 (+) 819 WP_045105370.1 phenylalanine 4-monooxygenase -
  LHA_RS03885 (LHA_0830) letA 839156..839815 (+) 660 WP_045105371.1 two-component system response regulator LetA Regulator
  LHA_RS03890 (LHA_0831) uvrC 840005..841849 (+) 1845 WP_045105372.1 excinuclease ABC subunit UvrC -
  LHA_RS03895 (LHA_0832) - 842055..842783 (+) 729 WP_045105373.1 L,D-transpeptidase -
  LHA_RS03900 (LHA_0833) - 842783..843322 (+) 540 WP_045105374.1 hypothetical protein -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24472.59 Da        Isoelectric Point: 5.4087

>NTDB_id=1113917 LHA_RS03885 WP_045105371.1 839156..839815(+) (letA) [Legionella hackeliae strain ATCC 35250]
MIKVLIVDDHALVRMGIRRLLEDLSDVEVVADAESGEQALTLVKSHKPDVVLLDMKMPGIDGWEVTRRLKKSNPLVKVIA
VTAVCAEPMPTRVLQLGAMGYLTKESGAEEMAAAIRKVARGEKYLSAEIAQKMAINSLEATQDSPFDLLSEREMQVMLMI
TSGMTVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTFLAMKHRVIEQPNDALHDE

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1113917 LHA_RS03885 WP_045105371.1 839156..839815(+) (letA) [Legionella hackeliae strain ATCC 35250]
TTGATAAAAGTTCTAATTGTTGATGACCATGCCCTGGTAAGAATGGGGATTCGACGATTACTTGAGGATCTATCGGATGT
TGAAGTAGTTGCTGATGCTGAAAGCGGTGAGCAAGCTTTGACATTGGTAAAATCTCATAAGCCTGATGTAGTCTTGCTTG
ATATGAAAATGCCTGGAATTGATGGCTGGGAAGTGACCAGACGGCTTAAAAAATCTAATCCTCTAGTGAAGGTGATTGCT
GTGACTGCTGTCTGTGCAGAGCCGATGCCTACTCGCGTTCTTCAATTGGGGGCGATGGGCTATTTAACCAAAGAGTCTGG
TGCTGAAGAAATGGCCGCGGCGATTCGTAAAGTGGCTAGAGGCGAGAAATATTTAAGTGCGGAGATCGCACAAAAAATGG
CTATCAATAGCCTTGAAGCAACACAAGACTCTCCTTTTGATCTGCTTTCAGAACGTGAAATGCAAGTCATGCTAATGATT
ACCAGCGGTATGACTGTGCAAGATATTGCAGATCGATTATTTCTAAGCTCTAAAACAATTAATGGCTATCGCTATCGAAT
GTTTGAAAAATTAGGTATAAAAAACGACGTTGAGCTTACTTTCCTGGCAATGAAACACCGTGTCATTGAACAACCCAATG
ATGCATTACATGATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0A8UM08

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

88.584

100

0.886

  letA Legionella pneumophila strain ERS1305867

88.584

100

0.886


Multiple sequence alignment