Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LHA_RS03870 Genome accession   NZ_LN681225
Coordinates   836345..837040 (-) Length   231 a.a.
NCBI ID   WP_407927331.1    Uniprot ID   -
Organism   Legionella hackeliae strain ATCC 35250     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 831345..842040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA_RS03845 (LHA_0821) hemA 832256..833518 (-) 1263 WP_045105364.1 glutamyl-tRNA reductase -
  LHA_RS03850 (LHA_0822) - 833714..833998 (+) 285 WP_045105365.1 hypothetical protein -
  LHA_RS03855 (LHA_0823) - 834007..835074 (+) 1068 WP_045105366.1 RIP metalloprotease -
  LHA_RS03860 (LHA_0825) - 835238..835543 (-) 306 WP_045105367.1 hypothetical protein -
  LHA_RS03865 (LHA_0826) - 835702..836358 (+) 657 WP_045105368.1 hypothetical protein -
  LHA_RS03870 (LHA_0827) comFC 836345..837040 (-) 696 WP_407927331.1 ComF family protein Machinery gene
  LHA_RS03875 (LHA_0828) bioC 837078..837944 (+) 867 WP_045105369.1 malonyl-ACP O-methyltransferase BioC -
  LHA_RS03880 (LHA_0829) phhA 838086..838904 (+) 819 WP_045105370.1 phenylalanine 4-monooxygenase -
  LHA_RS03885 (LHA_0830) letA 839156..839815 (+) 660 WP_045105371.1 two-component system response regulator LetA Regulator
  LHA_RS03890 (LHA_0831) uvrC 840005..841849 (+) 1845 WP_045105372.1 excinuclease ABC subunit UvrC -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26530.31 Da        Isoelectric Point: 9.6060

>NTDB_id=1113916 LHA_RS03870 WP_407927331.1 836345..837040(-) (comFC) [Legionella hackeliae strain ATCC 35250]
MRYKISSITHMLRFPSACVICSQYHRENCAVCKNCMTLLQPLGHACQYCAFPLPDKDFLVCGQCAKVKPAFDKAFVMYQF
EEPLRTLLHQYKYNGALYLRKFLVQLILSALPTEKTKTQCLIPVPLHPQRLRERGFNQAAEFSKHLAKTLKIPCELNLCK
KILHTPAQVSLNGKARRNNLRHAFEIKNNAYRHITLVDDLLTTGSTANELAKLFKRQGVERVDIWCCARTC

Nucleotide


Download         Length: 696 bp        

>NTDB_id=1113916 LHA_RS03870 WP_407927331.1 836345..837040(-) (comFC) [Legionella hackeliae strain ATCC 35250]
GTGCGCTACAAAATAAGCAGTATAACACACATGTTACGTTTCCCATCTGCTTGTGTTATCTGTTCTCAGTATCATCGTGA
AAACTGTGCGGTTTGTAAAAACTGTATGACTCTATTGCAGCCATTAGGTCATGCTTGCCAATACTGCGCATTCCCTCTAC
CTGATAAAGATTTTTTAGTGTGCGGTCAGTGCGCTAAAGTAAAACCTGCATTTGATAAAGCCTTTGTAATGTATCAATTT
GAAGAACCCTTACGCACCCTTTTACACCAGTACAAATACAATGGCGCACTTTATTTACGAAAGTTTTTAGTACAGCTAAT
TCTCTCTGCCTTACCCACTGAAAAGACCAAAACTCAATGTCTTATTCCTGTCCCTTTGCATCCTCAAAGATTGCGTGAAC
GAGGATTTAATCAGGCTGCAGAATTCTCCAAACATTTGGCAAAAACATTAAAAATACCTTGCGAACTCAATTTGTGTAAA
AAAATATTGCATACTCCCGCACAAGTCAGTCTCAACGGAAAAGCACGTCGAAATAATTTGCGTCATGCGTTTGAAATAAA
AAATAACGCTTATCGTCACATTACTTTAGTAGATGATTTATTAACTACAGGCAGTACTGCAAATGAATTAGCAAAGCTTT
TTAAAAGACAAGGAGTGGAGCGAGTTGACATTTGGTGTTGTGCTAGAACATGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

55.652

99.567

0.554
  comFC Legionella pneumophila strain ERS1305867

56.771

83.117

0.472

Multiple sequence alignment