Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VV28_RS13290 Genome accession   NZ_LN680001
Coordinates   2658524..2659141 (-) Length   205 a.a.
NCBI ID   WP_004398514.1    Uniprot ID   A0AAE2SLR2
Organism   Bacillus subtilis strain BS34A     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2653524..2664141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS13270 (BS34A_27980) rpsT 2653826..2654092 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  VV28_RS13275 (BS34A_27990) holA 2654107..2655150 (-) 1044 WP_003229987.1 DNA polymerase III subunit delta -
  VV28_RS22475 - 2655190..2655339 (-) 150 WP_003229985.1 hypothetical protein -
  VV28_RS21865 (BS34A_28000) yqzM 2655380..2655514 (+) 135 WP_003229983.1 YqzM family protein -
  VV28_RS13280 (BS34A_28010) comEC 2655554..2657884 (-) 2331 WP_009967776.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VV28_RS13285 (BS34A_28020) comEB 2657888..2658457 (-) 570 WP_003229978.1 ComE operon protein 2 -
  VV28_RS13290 (BS34A_28030) comEA 2658524..2659141 (-) 618 WP_004398514.1 competence protein ComEA Machinery gene
  VV28_RS13295 (BS34A_28040) comER 2659225..2660046 (+) 822 WP_004398597.1 late competence protein ComER -
  VV28_RS13300 (BS34A_28050) yqeM 2660112..2660855 (-) 744 WP_003229973.1 class I SAM-dependent methyltransferase -
  VV28_RS13305 (BS34A_28060) rsfS 2660852..2661208 (-) 357 WP_003229971.1 ribosome silencing factor -
  VV28_RS13310 (BS34A_28070) yqeK 2661226..2661786 (-) 561 WP_004399059.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  VV28_RS13315 (BS34A_28080) nadD 2661776..2662345 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  VV28_RS13320 (BS34A_28090) yhbY 2662357..2662647 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  VV28_RS13325 (BS34A_28100) aroE 2662641..2663483 (-) 843 WP_003229967.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21769.45 Da        Isoelectric Point: 4.7220

>NTDB_id=1113881 VV28_RS13290 WP_004398514.1 2658524..2659141(-) (comEA) [Bacillus subtilis strain BS34A]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1113881 VV28_RS13290 WP_004398514.1 2658524..2659141(-) (comEA) [Bacillus subtilis strain BS34A]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAGGAAAACGGTCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comEA Staphylococcus aureus MW2

37.273

100

0.4
  comEA Staphylococcus aureus N315

36.364

100

0.39

Multiple sequence alignment