Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   VV34_RS17415 Genome accession   NZ_LN649259
Coordinates   3288849..3289493 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS49     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3283849..3294493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV34_RS17380 (BS49_34760) mrpB 3285041..3285472 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  VV34_RS17385 (BS49_34770) mrpC 3285472..3285813 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  VV34_RS17390 (BS49_34780) mrpD 3285806..3287287 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  VV34_RS17395 (BS49_34790) mrpE 3287293..3287769 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  VV34_RS17400 (BS49_34800) mrpF 3287769..3288053 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  VV34_RS17405 (BS49_34810) mnhG 3288037..3288411 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  VV34_RS17410 (BS49_34820) yuxO 3288450..3288830 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  VV34_RS17415 (BS49_34830) comA 3288849..3289493 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  VV34_RS17420 (BS49_34840) comP 3289574..3291883 (-) 2310 WP_032723438.1 two-component system sensor histidine kinase ComP Regulator
  VV34_RS17425 (BS49_34850) comX 3291898..3292065 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  VV34_RS17430 (BS49_34860) comQ 3292053..3292952 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  VV34_RS17435 (BS49_34870) degQ 3293137..3293277 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  VV34_RS23795 - 3293499..3293624 (+) 126 WP_003228793.1 hypothetical protein -
  VV34_RS17440 (BS49_34880) - 3293738..3294106 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1113805 VV34_RS17415 WP_003220716.1 3288849..3289493(-) (comA) [Bacillus subtilis strain BS49]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1113805 VV34_RS17415 WP_003220716.1 3288849..3289493(-) (comA) [Bacillus subtilis strain BS49]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment