Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LMI_RS11560 Genome accession   NZ_LN614830
Coordinates   2608019..2608714 (+) Length   231 a.a.
NCBI ID   WP_102010556.1    Uniprot ID   A0A098GID9
Organism   Legionella micdadei strain ATCC 33218     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2603019..2613714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMI_RS11540 (LMI_2482) letA 2603753..2604418 (-) 666 WP_045099937.1 two-component system response regulator LetA Regulator
  LMI_RS11545 (LMI_2483) phhA 2604566..2605384 (-) 819 WP_045099938.1 phenylalanine 4-monooxygenase -
  LMI_RS11550 (LMI_2484) dacB 2605468..2606898 (-) 1431 WP_045099939.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  LMI_RS11555 (LMI_2485) bioC 2606988..2607845 (-) 858 WP_045100738.1 malonyl-ACP O-methyltransferase BioC -
  LMI_RS11560 (LMI_2486) comFC 2608019..2608714 (+) 696 WP_102010556.1 ComF family protein Machinery gene
  LMI_RS11565 (LMI_2487) - 2608711..2609787 (-) 1077 WP_045099940.1 site-2 protease family protein -
  LMI_RS11570 (LMI_2488) - 2609846..2610130 (-) 285 WP_045099941.1 hypothetical protein -
  LMI_RS11575 (LMI_2489) hemA 2610498..2611772 (+) 1275 WP_045099942.1 glutamyl-tRNA reductase -
  LMI_RS11580 (LMI_2490) prfA 2611756..2612844 (+) 1089 WP_045099943.1 peptide chain release factor 1 -
  LMI_RS11585 (LMI_2491) prmC 2612837..2613676 (+) 840 WP_045099944.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26529.19 Da        Isoelectric Point: 9.6440

>NTDB_id=1113655 LMI_RS11560 WP_102010556.1 2608019..2608714(+) (comFC) [Legionella micdadei strain ATCC 33218]
MRQKITSITQLLRLPSVCVLCNQYHDQPFPVCHPCTRLFKKIGPACRYCAHPLPDEKYLVCGICVKEKPTIDNTITAYRF
EEPLRTLLHGFKYHEAFYLGGFLAKLILEALANRPITTECLIPVPLHPKRLRQRGFNQAVELSRILSKKLQIPCEPNLCK
RIVHTDPQVNLDRKQRKQNVRGAFQSKLTHYQHITLVDDLLTTGSTANELARVLKQQGATRIDLWCCARAF

Nucleotide


Download         Length: 696 bp        

>NTDB_id=1113655 LMI_RS11560 WP_102010556.1 2608019..2608714(+) (comFC) [Legionella micdadei strain ATCC 33218]
GTGCGCCAGAAAATCACCAGTATAACACAGTTGTTGCGTTTGCCTTCGGTCTGTGTCCTTTGTAACCAATACCATGATCA
ACCCTTTCCTGTTTGTCATCCATGCACACGCTTGTTTAAGAAAATCGGACCTGCATGCCGTTATTGCGCCCATCCTTTGC
CGGATGAAAAATATTTAGTTTGCGGGATTTGTGTAAAAGAAAAACCAACCATTGATAATACAATCACAGCTTATCGGTTC
GAAGAACCTTTACGCACTTTATTGCATGGATTTAAATATCATGAAGCATTTTACCTGGGTGGGTTTTTGGCCAAATTAAT
ATTAGAAGCATTGGCAAATCGACCGATCACCACAGAATGCCTCATTCCTGTCCCCTTGCATCCTAAGCGCCTTAGGCAGA
GAGGCTTCAATCAGGCAGTTGAACTCTCTAGAATTCTATCTAAAAAATTACAGATACCTTGTGAGCCCAATCTTTGTAAA
CGCATTGTCCATACCGATCCGCAAGTTAATTTAGATAGAAAACAACGAAAACAAAACGTGCGCGGTGCTTTTCAAAGTAA
ATTGACTCACTATCAACACATTACTTTGGTGGATGATTTATTGACAACTGGGAGCACAGCTAATGAATTGGCACGTGTTC
TTAAACAACAAGGCGCCACTCGAATTGATCTTTGGTGTTGTGCGCGGGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098GID9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

53.913

99.567

0.537
  comFC Legionella pneumophila strain ERS1305867

53.646

83.117

0.446

Multiple sequence alignment