Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LFA_RS14500 Genome accession   NZ_LN614827
Coordinates   3467015..3469228 (+) Length   737 a.a.
NCBI ID   WP_045096814.1    Uniprot ID   -
Organism   Legionella fallonii LLAP-10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3462015..3474228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFA_RS14485 (LFA_3170) - 3462200..3462730 (+) 531 WP_045096812.1 pilus assembly protein -
  LFA_RS14490 (LFA_3171) - 3462743..3466246 (+) 3504 WP_045096813.1 PilC/PilY family type IV pilus protein -
  LFA_RS14495 (LFA_3172) pilE 3466480..3466887 (+) 408 WP_045097646.1 type IV pilin protein Machinery gene
  LFA_RS14500 (LFA_3173) comEC 3467015..3469228 (+) 2214 WP_045096814.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LFA_RS14505 (LFA_3174) - 3469327..3470376 (+) 1050 WP_045096815.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  LFA_RS14515 (LFA_3175) - 3470746..3471201 (-) 456 WP_045096817.1 hypothetical protein -
  LFA_RS18985 (LFA_3176) - 3471411..3473879 (-) 2469 WP_052673985.1 hypothetical protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 83636.14 Da        Isoelectric Point: 9.1516

>NTDB_id=1113633 LFA_RS14500 WP_045096814.1 3467015..3469228(+) (comEC) [Legionella fallonii LLAP-10]
MEIFCFFLGILYVYTSNLFLPLGVVALFFITPRYPIILLFIMGLLIAWLHQWLTLPKGMPDAPVISQALLQGTIASIPVK
NINKTQFLFSIDKVNGAPAQGLVQLNWYNKTPSLHARQHWQFTAKIKKPRNFLNPGSYDYVNSLKKRHIYWTGYIKSKNN
KLIPQPHSSWTWLSLREHLGQALTKLAPDQQTAGVVEALTLNLTTHISQEDWSLFRRTGTTHLFGISGEHIALISGLCML
IVRWLWTRSIRCCLCIPAITIASIGGFIVAVCYAFLAGFEPPVQRALIGNFFYTVYCLGKQRYTPWQIWRYALFGVLCLE
PHAVFMQGFYFSFLAVACLFLTQQRWRLKGYKGTLALQLSCLIGLMPLTLYWFSYGSINGFIANLFAIPLVGLLIVPLSL
ITMLVSSFDWAWFLMKPLSWSIALLFKGLTWVEYLDAINITWSIHQIAFVLSLMGALLLWILLPVRPFKYLALLWLIIPL
FPAHRVIQKGEAVIQILDVGQGLAVAIQTQNHTLLYDTGDQFFQGSDLGAMVILPFYQAIGVKKIDKIVISHPDKDHRGG
LKSIETGISVDELLVNNTHYYDHGMTCHDYPGWQWDEISFHFFPIHQSFRDKNNNSCILQISNAAGGILFTGDIEQMGED
YLVRTYGNQLNSQVLIVPHHGSKTSSSYRFLLEVAPRYAIASLGFDNRFHFPHAQTLTRMNSLNIPFIRTDECGMVDITL
PATGTIKKPKCYNGLNF

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=1113633 LFA_RS14500 WP_045096814.1 3467015..3469228(+) (comEC) [Legionella fallonii LLAP-10]
ATGGAAATTTTTTGCTTTTTCCTTGGCATACTCTATGTCTATACCTCTAATCTTTTTTTACCCCTTGGGGTTGTCGCACT
GTTCTTTATTACCCCACGATATCCAATCATCCTGTTATTTATTATGGGACTGCTGATCGCCTGGCTTCATCAGTGGCTCA
CGTTACCTAAAGGTATGCCTGATGCTCCTGTTATCTCTCAAGCTCTTTTACAAGGAACCATTGCTTCTATCCCGGTAAAA
AACATCAATAAAACTCAATTTTTATTCTCTATTGACAAGGTTAATGGCGCGCCCGCCCAAGGATTAGTGCAATTAAATTG
GTACAATAAAACACCATCATTACATGCAAGACAGCATTGGCAGTTTACTGCAAAGATAAAAAAGCCACGTAATTTTCTCA
ACCCTGGTAGTTATGATTATGTTAACTCACTGAAAAAACGACACATTTATTGGACCGGCTATATTAAATCTAAAAATAAC
AAATTAATACCTCAACCTCATTCTTCATGGACTTGGCTATCGCTGCGTGAACATTTAGGACAGGCATTAACAAAACTAGC
TCCAGATCAACAGACAGCAGGAGTTGTAGAAGCCCTCACATTAAATCTCACCACACACATCAGCCAAGAAGATTGGAGCT
TATTCAGACGCACAGGGACAACTCACTTATTTGGTATTTCAGGGGAACATATAGCCCTAATTTCGGGACTTTGTATGCTG
ATTGTCCGATGGTTATGGACAAGAAGCATTCGCTGTTGTTTATGTATACCGGCCATTACTATAGCCAGCATTGGTGGTTT
CATTGTTGCTGTTTGTTATGCTTTTTTAGCTGGCTTTGAGCCACCAGTACAAAGAGCATTAATCGGGAATTTTTTTTATA
CCGTTTACTGTTTAGGAAAACAACGTTATACGCCCTGGCAAATTTGGCGCTATGCCCTCTTCGGCGTCTTGTGCCTTGAA
CCTCATGCTGTTTTTATGCAAGGATTTTATTTTTCTTTTCTGGCTGTAGCTTGTTTATTCTTGACGCAACAACGCTGGCG
CCTCAAAGGTTATAAAGGAACACTAGCCTTACAACTCAGCTGCCTAATAGGCTTAATGCCTTTAACGCTGTATTGGTTCT
CCTATGGCTCTATCAATGGATTTATTGCCAATTTATTCGCTATTCCTTTAGTTGGTTTATTGATAGTGCCTCTATCATTA
ATCACTATGTTAGTCAGTTCTTTTGATTGGGCTTGGTTCTTAATGAAACCGCTTTCTTGGTCAATTGCTTTATTATTCAA
AGGATTAACTTGGGTTGAGTATTTAGATGCTATTAACATCACCTGGTCTATTCATCAGATTGCCTTTGTACTCTCGCTAA
TGGGAGCTTTGCTCTTATGGATTTTATTACCAGTAAGACCGTTCAAATACCTAGCACTACTTTGGCTTATTATCCCTTTA
TTTCCAGCCCATCGTGTAATCCAGAAAGGAGAAGCAGTAATACAAATACTAGATGTTGGACAAGGCTTGGCCGTCGCTAT
TCAGACACAAAATCACACACTACTCTACGATACAGGCGATCAATTTTTTCAAGGAAGTGATCTAGGAGCTATGGTCATTT
TACCTTTTTATCAGGCGATAGGAGTAAAAAAAATAGATAAAATTGTGATTAGTCATCCAGATAAAGATCATAGGGGAGGG
TTAAAATCAATTGAAACAGGGATCTCTGTGGACGAGTTATTAGTGAATAATACCCATTATTACGATCACGGCATGACTTG
TCATGATTACCCGGGATGGCAATGGGATGAAATTTCTTTTCATTTTTTTCCCATACACCAATCTTTTCGGGATAAAAATA
ATAATTCCTGTATCTTACAAATCAGCAATGCAGCAGGAGGTATTTTATTCACTGGAGATATAGAGCAAATGGGAGAAGAT
TATTTGGTAAGAACCTATGGAAACCAATTAAATTCACAAGTATTGATCGTTCCTCACCATGGCAGCAAAACCTCCTCTTC
TTATCGCTTTTTGCTTGAGGTAGCTCCTCGCTATGCCATTGCTTCGTTGGGCTTTGATAATCGTTTTCACTTCCCCCACG
CCCAGACTCTTACCCGTATGAACTCCTTAAATATCCCTTTTATTCGAACGGATGAATGTGGCATGGTAGACATCACTCTT
CCTGCCACAGGGACAATAAAAAAACCTAAGTGTTATAATGGACTCAATTTTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-159)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-564)

Competence protein (Competence)

(199-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

66.395

99.729

0.662
  comEC Legionella pneumophila strain ERS1305867

65.937

99.186

0.654

Multiple sequence alignment