Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   LFA_RS14495 Genome accession   NZ_LN614827
Coordinates   3466480..3466887 (+) Length   135 a.a.
NCBI ID   WP_045097646.1    Uniprot ID   -
Organism   Legionella fallonii LLAP-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3461480..3471887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFA_RS14485 (LFA_3170) - 3462200..3462730 (+) 531 WP_045096812.1 pilus assembly protein -
  LFA_RS14490 (LFA_3171) - 3462743..3466246 (+) 3504 WP_045096813.1 PilC/PilY family type IV pilus protein -
  LFA_RS14495 (LFA_3172) pilE 3466480..3466887 (+) 408 WP_045097646.1 type IV pilin protein Machinery gene
  LFA_RS14500 (LFA_3173) comEC 3467015..3469228 (+) 2214 WP_045096814.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LFA_RS14505 (LFA_3174) - 3469327..3470376 (+) 1050 WP_045096815.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  LFA_RS14515 (LFA_3175) - 3470746..3471201 (-) 456 WP_045096817.1 hypothetical protein -

Sequence


Protein


Download         Length: 135 a.a.        Molecular weight: 14611.49 Da        Isoelectric Point: 7.5825

>NTDB_id=1113632 LFA_RS14495 WP_045097646.1 3466480..3466887(+) (pilE) [Legionella fallonii LLAP-10]
MQGFTLVELLITLIIVGILVTIAYPSYKAYLMKSRRSDALQTLTQDQLILERCYSTNFSYSTACGALPAFPQTSTQGFYS
ITISNLGTSTYTLTATPIGSQAQDTTCANISVNQANARTANNSSNTSQSICWNPT

Nucleotide


Download         Length: 408 bp        

>NTDB_id=1113632 LFA_RS14495 WP_045097646.1 3466480..3466887(+) (pilE) [Legionella fallonii LLAP-10]
ATCCAAGGATTTACCCTGGTAGAACTCCTCATCACCCTGATAATAGTGGGAATACTCGTAACTATAGCGTACCCATCCTA
TAAGGCTTATCTGATGAAATCGCGCCGTTCGGATGCATTACAAACGCTGACGCAGGATCAACTTATTCTAGAGCGTTGTT
ATTCAACTAATTTTTCGTATAGTACAGCATGCGGCGCGCTTCCTGCTTTTCCTCAAACATCAACACAAGGATTTTACAGC
ATTACTATTTCAAACTTAGGAACATCAACGTATACCTTAACGGCAACACCTATTGGTTCTCAAGCTCAAGATACAACATG
TGCCAACATCAGTGTAAATCAAGCCAATGCTCGAACGGCTAATAACTCGTCTAATACATCACAATCCATCTGCTGGAATC
CGACATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

67.424

97.778

0.659

  pilE Legionella pneumophila strain ERS1305867

67.424

97.778

0.659


Multiple sequence alignment