Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LFA_RS03765 Genome accession   NZ_LN614827
Coordinates   954120..954440 (+) Length   106 a.a.
NCBI ID   WP_045094987.1    Uniprot ID   -
Organism   Legionella fallonii LLAP-10     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 949120..959440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFA_RS03750 (LFA_0847) nadC 950322..951164 (+) 843 WP_045094984.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LFA_RS03755 (LFA_0848) - 951161..952252 (+) 1092 WP_045094985.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  LFA_RS03760 (LFA_0849) - 952227..953645 (+) 1419 WP_045094986.1 M20 family metallopeptidase -
  LFA_RS03765 (LFA_0850) comEA 954120..954440 (+) 321 WP_045094987.1 helix-hairpin-helix domain-containing protein Machinery gene
  LFA_RS03770 (LFA_0851) - 954652..954840 (-) 189 WP_045094988.1 hypothetical protein -
  LFA_RS03775 (LFA_0852) - 954870..955358 (-) 489 WP_045094989.1 hypothetical protein -
  LFA_RS03780 (LFA_0854) - 955962..956999 (+) 1038 WP_045097400.1 rod shape-determining protein -
  LFA_RS03785 (LFA_0855) mreC 956977..957885 (+) 909 WP_045094990.1 rod shape-determining protein MreC -
  LFA_RS03790 (LFA_0856) mreD 957882..958361 (+) 480 WP_045094991.1 rod shape-determining protein MreD -
  LFA_RS03795 (LFA_0857) - 958287..958886 (-) 600 WP_045094992.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11487.38 Da        Isoelectric Point: 10.4861

>NTDB_id=1113604 LFA_RS03765 WP_045094987.1 954120..954440(+) (comEA) [Legionella fallonii LLAP-10]
MKAKYTALCLSLFIIIPSVHAASSQNPSSTKQAAVVKNKIDLNKADLSALTGSFKGIGKKRAAAIIAYRESHHGFKAIEE
LASVKGFGQHFLDVNKEKLKEVFTVN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=1113604 LFA_RS03765 WP_045094987.1 954120..954440(+) (comEA) [Legionella fallonii LLAP-10]
ATGAAAGCAAAATATACTGCTTTGTGTTTGTCATTATTTATAATAATCCCCTCAGTCCATGCCGCGAGTAGTCAAAATCC
CTCTTCCACAAAACAAGCTGCTGTAGTCAAAAATAAAATTGATCTTAATAAAGCTGACCTGTCTGCTCTTACTGGATCAT
TTAAAGGGATAGGAAAAAAGCGTGCCGCAGCCATCATTGCTTATAGGGAGAGTCATCACGGCTTTAAAGCCATTGAGGAA
CTAGCTTCTGTCAAAGGATTTGGCCAGCATTTTCTTGATGTAAATAAAGAGAAACTGAAGGAAGTTTTTACCGTAAATTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

58.491

100

0.585
  comEA Legionella pneumophila strain ERS1305867

58.491

100

0.585
  comE1/comEA Haemophilus influenzae Rd KW20

35.455

100

0.368

Multiple sequence alignment