Detailed information NTG1113588

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: CD630DERM_RS04015
• Genome accession: NZ_LN614756
• Coordinates: 814834..815541 (+)
• Length: 235 a.a.
• NCBI ID: WP_009888460.1
• Uniprot ID: A0A9Q8EBL8
• Organism: Clostridioides difficile strain 630Derm
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 809834..820541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CD630DERM_RS03990 (CD0664A)	cdd1	810629..810874 (+)	246	WP_009888450.1	protein Cdd1	-
CD630DERM_RS03995 (CD0664B)	-	811092..811361 (-)	270	WP_003426848.1	DUF3795 domain-containing protein	-
CD630DERM_RS04000 (CD0665)	-	812239..812976 (-)	738	WP_011860906.1	ABC transporter permease	-
CD630DERM_RS04005 (CD0666)	-	812988..813749 (-)	762	WP_011860907.1	ABC transporter permease	-
CD630DERM_RS04010 (CD0667)	-	813749..814672 (-)	924	WP_031280291.1	ABC transporter ATP-binding protein	-
CD630DERM_RS04015 (CD0668)	scnR	814834..815541 (+)	708	WP_009888460.1	response regulator transcription factor	Regulator
CD630DERM_RS04020 (CD0669)	-	815586..816992 (+)	1407	WP_011860909.1	sensor histidine kinase	-
CD630DERM_RS04025 (CD0670)	-	818754..819143 (+)	390	WP_003426867.1	BlaI/MecI/CopY family transcriptional regulator	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26716.17 Da
• Isoelectric Point: 6.1467

>NTDB_id=1113588 CD630DERM_RS04015 WP_009888460.1 814834..815541(+) (scnR) [Clostridioides difficile strain 630Derm]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide

• Length: 708 bp

>NTDB_id=1113588 CD630DERM_RS04015 WP_009888460.1 814834..815541(+) (scnR) [Clostridioides difficile strain 630Derm]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-232)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.918	98.298	0.481
micA	Streptococcus pneumoniae Cp1015	40	100	0.4
vicR	Streptococcus mutans UA159	38.362	98.723	0.379