Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SXYL_RS12580 Genome accession   NZ_LN554884
Coordinates   2639177..2639698 (-) Length   173 a.a.
NCBI ID   WP_047172931.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain C2a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2634177..2644698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SXYL_RS13230 (SXYL_02567) - 2637640..2638674 (-) 1035 WP_052671249.1 condensation domain-containing protein -
  SXYL_RS12580 (SXYL_02568) ssbA 2639177..2639698 (-) 522 WP_047172931.1 single-stranded DNA-binding protein Machinery gene
  SXYL_RS12585 (SXYL_02569) rpsF 2639717..2640022 (-) 306 WP_017723387.1 30S ribosomal protein S6 -
  SXYL_RS12590 (SXYL_02570) - 2640452..2641258 (+) 807 WP_047172932.1 GH25 family lysozyme -
  SXYL_RS12595 (SXYL_02571) ychF 2641408..2642505 (-) 1098 WP_042363431.1 redox-regulated ATPase YchF -
  SXYL_RS12600 (SXYL_02572) - 2642505..2642720 (-) 216 WP_029378813.1 DUF951 domain-containing protein -
  SXYL_RS12605 (SXYL_02573) - 2642742..2643626 (-) 885 WP_042363432.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19272.77 Da        Isoelectric Point: 4.9056

>NTDB_id=1113570 SXYL_RS12580 WP_047172931.1 2639177..2639698(-) (ssbA) [Staphylococcus xylosus strain C2a]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFPNFGGQQSGQNTSSYQNNNNNNNNNNTSNNNQSDNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1113570 SXYL_RS12580 WP_047172931.1 2639177..2639698(-) (ssbA) [Staphylococcus xylosus strain C2a]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGGCGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGCCAAGAAGGGAATAATAATTTCCCAAACTTTGGCGGACAACAATCAGGACAAAATACATCGT
CATATCAAAATAACAATAACAATAATAACAACAACAATACATCAAATAATAATCAATCAGATAACCCATTTGCAAATGCA
AACGGACCTATTGATATTAGTGATGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.636
  ssb Latilactobacillus sakei subsp. sakei 23K

57.062

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

63.584

0.376

Multiple sequence alignment