Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SXYL_RS04680 Genome accession   NZ_LN554884
Coordinates   1010110..1010739 (+) Length   209 a.a.
NCBI ID   WP_017723494.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain C2a     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1005110..1015739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SXYL_RS04655 (SXYL_00947) - 1005956..1006942 (-) 987 WP_042362407.1 FUSC family protein -
  SXYL_RS04660 (SXYL_00948) map 1007119..1007871 (+) 753 WP_039069016.1 type I methionyl aminopeptidase -
  SXYL_RS04665 (SXYL_00949) - 1007976..1008362 (+) 387 WP_042362408.1 hypothetical protein -
  SXYL_RS04670 (SXYL_00950) liaF 1008379..1009080 (+) 702 WP_042362409.1 cell wall-active antibiotics response protein LiaF -
  SXYL_RS04675 (SXYL_00951) vraS 1009077..1010120 (+) 1044 WP_042362410.1 sensor histidine kinase Regulator
  SXYL_RS04680 (SXYL_00952) vraR 1010110..1010739 (+) 630 WP_017723494.1 response regulator transcription factor Regulator
  SXYL_RS04685 (SXYL_00953) - 1011008..1012153 (-) 1146 WP_042362411.1 YihY/virulence factor BrkB family protein -
  SXYL_RS04690 (SXYL_00954) - 1012509..1012793 (-) 285 WP_042362412.1 hypothetical protein -
  SXYL_RS04695 (SXYL_00955) - 1012800..1013264 (-) 465 WP_029378983.1 low molecular weight protein-tyrosine-phosphatase -
  SXYL_RS04700 (SXYL_00956) - 1013399..1013602 (+) 204 WP_017723498.1 DUF1128 family protein -
  SXYL_RS04705 (SXYL_00957) - 1013620..1014858 (+) 1239 WP_047172144.1 aminopeptidase -
  SXYL_RS04710 (SXYL_00958) - 1014947..1015468 (+) 522 WP_042362415.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23734.27 Da        Isoelectric Point: 4.7778

>NTDB_id=1113551 SXYL_RS04680 WP_017723494.1 1010110..1010739(+) (vraR) [Staphylococcus xylosus strain C2a]
MPIKVLFVDDHEMVRIGISSYLSTQPDIDVVGEGKSGKEAIEKAHQLNPDLILMDLLMDDMDGVEATEQVKKDLPHMKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1113551 SXYL_RS04680 WP_017723494.1 1010110..1010739(+) (vraR) [Staphylococcus xylosus strain C2a]
ATGCCGATTAAAGTTTTATTTGTGGATGACCATGAAATGGTCCGAATTGGAATATCTAGCTATTTATCAACACAACCAGA
TATTGATGTTGTAGGAGAAGGGAAATCCGGAAAGGAAGCAATTGAAAAGGCTCACCAATTGAATCCAGATTTAATATTAA
TGGATTTATTAATGGATGATATGGACGGTGTTGAAGCAACCGAACAAGTAAAAAAAGATTTACCTCATATGAAAGTAGTT
ATGCTTACGAGTTATATAGAAGATAACGAAGTATACCGTGCACTTGATTCTGGCGTTGATAGCTACATTTTAAAAACAAC
GAGTGCTAGTGATATTGCAGAGGCAATAAGAAAAACCTATAATAATGAGTCGGTTTTTGAAGCGGAAGTTTTAGTTAAGA
TGAGAAATAGAATGAAGCAACGTGCGGAATTATATGAAATGTTAACAGAACGTGAGATGGAAATCTTATTATTAATAGCA
AAAGGCTACTCAAACCAAGAAATAGCAAGCGCCTCACATATTACAATTAAAACCGTTAAAACACATGTAAGTAATATTTT
GAGTAAATTAGAAGTACAAGATAGAACACAAGCTGTTATTTACGCTTTTCAGCATAACTTAATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

88.517

100

0.885
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368

Multiple sequence alignment