Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | VANGNB10_RS18290 | Genome accession | NZ_LK021130 |
| Coordinates | 2751197..2751799 (-) | Length | 200 a.a. |
| NCBI ID | WP_013855886.1 | Uniprot ID | A0AAW4AFV0 |
| Organism | Vibrio anguillarum strain NB10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2746197..2756799
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VANGNB10_RS18265 (TVA0134) | aroB | 2746543..2747631 (-) | 1089 | WP_026027894.1 | 3-dehydroquinate synthase | - |
| VANGNB10_RS18270 (TVA0135) | aroK | 2747656..2748177 (-) | 522 | WP_010317691.1 | shikimate kinase AroK | - |
| VANGNB10_RS18275 (TVA0136) | pilQ | 2748364..2750079 (-) | 1716 | WP_013855889.1 | type IV pilus secretin PilQ | Machinery gene |
| VANGNB10_RS18280 (TVA0137) | pilP | 2750103..2750624 (-) | 522 | WP_013855888.1 | pilus assembly protein PilP | Machinery gene |
| VANGNB10_RS18285 (TVA0138) | pilO | 2750611..2751204 (-) | 594 | WP_013855887.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| VANGNB10_RS18290 (TVA0139) | pilN | 2751197..2751799 (-) | 603 | WP_013855886.1 | PilN domain-containing protein | Machinery gene |
| VANGNB10_RS18295 (TVA0140) | pilM | 2751789..2752799 (-) | 1011 | WP_013855885.1 | type IV pilus assembly protein PilM | Machinery gene |
| VANGNB10_RS18300 (TVA0141) | - | 2752949..2755447 (+) | 2499 | WP_013855884.1 | penicillin-binding protein 1A | - |
| VANGNB10_RS18305 (TVA0142) | oxyR | 2755484..2756374 (-) | 891 | WP_026027425.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 200 a.a. Molecular weight: 22702.27 Da Isoelectric Point: 9.6928
>NTDB_id=1113450 VANGNB10_RS18290 WP_013855886.1 2751197..2751799(-) (pilN) [Vibrio anguillarum strain NB10]
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQLQESRLAYLNQYIQQLDKQINALKMTEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKEFQTFKVSFMFHSPTPQGSVLTKIRPTGAVHD
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQLQESRLAYLNQYIQQLDKQINALKMTEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKEFQTFKVSFMFHSPTPQGSVLTKIRPTGAVHD
Nucleotide
Download Length: 603 bp
>NTDB_id=1113450 VANGNB10_RS18290 WP_013855886.1 2751197..2751799(-) (pilN) [Vibrio anguillarum strain NB10]
ATGTTGCATAGCATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCGGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCACAGCTGCAAGAGTCTC
GTCTGGCCTATTTGAATCAATACATTCAGCAGCTTGATAAACAGATCAATGCATTAAAAATGACGGAACAAGAACACAAG
GCACTATTAACTCGCTTATCGGTTGTTGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATTACGGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CACGGTAATAAGCGATTTGGTAAGGAGTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCACAGGGCTC
TGTGCTAACCAAGATTCGGCCTACAGGAGCTGTCCATGACTAG
ATGTTGCATAGCATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCGGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCACAGCTGCAAGAGTCTC
GTCTGGCCTATTTGAATCAATACATTCAGCAGCTTGATAAACAGATCAATGCATTAAAAATGACGGAACAAGAACACAAG
GCACTATTAACTCGCTTATCGGTTGTTGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATTACGGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CACGGTAATAAGCGATTTGGTAAGGAGTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCACAGGGCTC
TGTGCTAACCAAGATTCGGCCTACAGGAGCTGTCCATGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
67.553 |
94 |
0.635 |
| pilN | Vibrio campbellii strain DS40M4 |
65.591 |
93 |
0.61 |