Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VANGNB10_RS18180 Genome accession   NZ_LK021130
Coordinates   2725500..2726132 (+) Length   210 a.a.
NCBI ID   WP_010318741.1    Uniprot ID   A0AAW8GZN2
Organism   Vibrio anguillarum strain NB10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2720500..2731132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VANGNB10_RS18155 (TVA0111) - 2720574..2722493 (+) 1920 WP_013855909.1 ABC transporter ATP-binding protein -
  VANGNB10_RS18160 (TVA0112) - 2722495..2722974 (+) 480 WP_013855908.1 TIGR02444 family protein -
  VANGNB10_RS18165 (TVA0113) - 2723031..2724038 (+) 1008 WP_013855907.1 hydrolase -
  VANGNB10_RS18170 (TVA0115) - 2724100..2724306 (+) 207 WP_010318743.1 YheU family protein -
  VANGNB10_RS18175 (TVA0116) - 2724389..2725258 (+) 870 WP_010318742.1 phosphoribulokinase -
  VANGNB10_RS18180 (TVA0117) crp 2725500..2726132 (+) 633 WP_010318741.1 cAMP-activated global transcriptional regulator CRP Regulator
  VANGNB10_RS18185 (TVA0118) - 2726236..2727030 (-) 795 WP_013855906.1 DUF1338 domain-containing protein -
  VANGNB10_RS18190 (TVA0119) astD 2727099..2728556 (-) 1458 WP_013855905.1 succinylglutamate-semialdehyde dehydrogenase -
  VANGNB10_RS18195 (TVA0120) astA 2728588..2729607 (-) 1020 WP_029190038.1 arginine N-succinyltransferase -
  VANGNB10_RS18200 (TVA0121) - 2729674..2730885 (-) 1212 WP_041769032.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23663.44 Da        Isoelectric Point: 7.8388

>NTDB_id=1113446 VANGNB10_RS18180 WP_010318741.1 2725500..2726132(+) (crp) [Vibrio anguillarum strain NB10]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQISRRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1113446 VANGNB10_RS18180 WP_010318741.1 2725500..2726132(+) (crp) [Vibrio anguillarum strain NB10]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAATACCCATCGAA
AAGCACGTTGATTCATGCGGGCGAAAAAGCAGAGACGCTGTACTACATCGTCAAAGGCTCGGTAGCGGTATTGATTAAAG
ACGAAGAAGGTAAAGAGATGATCCTCTCTTACCTAAACCAAGGTGACTTTATCGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTTGCGGAAATTTCATTTAAGAAATTCCGTCAGCTTAT
CCAAGTGAACCCAGACATCTTAATGCGTCTGTCTGCACAAATTTCTCGACGTCTACAAGTCACCAGTCAAAAAGTGGGTG
ATTTAGCCTTCCTAGACGTGACGGGTCGTATTGCACAAACGCTACTCAACCTAGCGAAACAACCTGATGCAATGACGCAC
CCAGATGGCATGCAAATCAAAATCACCCGTCAAGAGATCGGCCAAATTGTAGGCTGTTCTCGTGAAACTGTGGGACGTAT
TTTGAAGATGCTCGAAGAGCAGAATTTAATTTCTGCCCACGGTAAAACTATCGTGGTGTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment