Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   VANGNB10_RS14735 Genome accession   NZ_LK021130
Coordinates   1997656..1999899 (-) Length   747 a.a.
NCBI ID   WP_029189791.1    Uniprot ID   -
Organism   Vibrio anguillarum strain NB10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1992656..2004899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VANGNB10_RS14710 (TVA0615) - 1993391..1993909 (+) 519 WP_013856537.1 cytochrome b -
  VANGNB10_RS14715 (TVA0616) kdsB 1993952..1994704 (-) 753 WP_013856536.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VANGNB10_RS14720 - 1994704..1994883 (-) 180 WP_013856535.1 Trm112 family protein -
  VANGNB10_RS14725 (TVA0617) lpxK 1994864..1995871 (-) 1008 WP_013856534.1 tetraacyldisaccharide 4'-kinase -
  VANGNB10_RS14730 (TVA0618) msbA 1995875..1997623 (-) 1749 WP_013856533.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  VANGNB10_RS14735 (TVA0619) comEC 1997656..1999899 (-) 2244 WP_029189791.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VANGNB10_RS14740 (TVA0620) - 1999906..2000415 (+) 510 WP_010319231.1 DUF2062 domain-containing protein -
  VANGNB10_RS14745 (TVA0621) lolE 2000554..2001798 (-) 1245 WP_013856531.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  VANGNB10_RS14750 (TVA0622) lolD 2001799..2002485 (-) 687 WP_013856530.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VANGNB10_RS14755 (TVA0623) lolC 2002478..2003686 (-) 1209 WP_041947026.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  VANGNB10_RS14760 (TVA0624) - 2003852..2004421 (+) 570 WP_013856528.1 hypothetical protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83533.44 Da        Isoelectric Point: 9.4397

>NTDB_id=1113444 VANGNB10_RS14735 WP_029189791.1 1997656..1999899(-) (comEC) [Vibrio anguillarum strain NB10]
MTLLSNYWTLASFSLTAISASYWPWMPDWKWIMPLFAILILSVVYRKLRFLSGVTMALMVIVISGNLLREQSNTIFQTGS
DITINGQVNSFFRQITHGYEGTISIRSINGQTLGIFLRPKVRLIAPLPLKYGDVAEFSITVKPIFGRLNETGFDAEAYSL
SQGIVARATVNNGQSYRIESLPEWRAQWYQKIKTWLADDPNLGILMALTFGERSDISTAQWQALRDSGLIHLVAISGLHI
GIAFGFGYSLGLVLMRLHHRMGWSPFVVGSLCALGYAWLAGFTLPTQRALIMCLLNVAMIVLNVRINTLQRLLMTLSAVL
LIDPFAALSSSFWMSFIAVSVVFYQLSLPQTNRFFLWRLLTMQIGLVLCMLPVTAYFFGGVSTSAALYNLVFIPWFSFVV
VPAIFVALVCTFLTFDGAPMVWHWVAKLLIPVDWSIHYSSLSWFPISGAVLALLSSALLLFVFSPLISRFALAVYSLIVM
VSWLTIPIKTGWRIDVLDVGHGLAVLIEKEGRYVLYDTGASWQGGDHIQATVAPVLNKRGATQLDGLILSHLDNDHAGGR
AEVERVWQPKWKRASQTIAGYQPCIAGEQWQWQQLSFDVIWPPKTVARAYNPHSCVIRIFDQNTGFSVLLPGDVDAMSEW
LLARTEQSLQSHILLVPHHGSRTSSTVALISKVNPEVAIASLAKGGRWQLPSAQVVQRYQQHGANWLDTGEAGQISVIFG
MQNYQVSSLRISRSQAWYRQMLRNEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=1113444 VANGNB10_RS14735 WP_029189791.1 1997656..1999899(-) (comEC) [Vibrio anguillarum strain NB10]
ATGACTCTCTTATCTAATTACTGGACCCTAGCTTCGTTTTCGCTAACCGCCATTTCTGCTTCTTATTGGCCTTGGATGCC
AGATTGGAAATGGATTATGCCTCTATTCGCCATTCTTATACTCTCTGTCGTTTATAGAAAACTGCGCTTTCTCTCAGGAG
TAACAATGGCTTTAATGGTCATTGTGATCAGCGGGAACTTATTACGTGAGCAGTCCAACACTATTTTTCAGACAGGTTCG
GATATTACCATAAACGGACAGGTTAACAGCTTTTTTAGACAAATTACTCATGGTTATGAAGGAACAATTTCGATTCGATC
AATCAATGGTCAAACCTTAGGCATTTTTTTGCGGCCCAAGGTGCGATTAATAGCTCCTTTACCGTTGAAGTATGGTGACG
TGGCTGAATTCTCCATCACAGTAAAACCTATCTTTGGTCGGTTAAATGAGACCGGGTTTGATGCAGAGGCGTACTCTTTG
AGCCAAGGTATTGTGGCTCGTGCAACGGTTAATAATGGACAGTCTTATCGCATTGAATCATTACCAGAATGGCGAGCGCA
ATGGTACCAGAAGATCAAAACCTGGCTCGCTGATGATCCCAATCTTGGTATTTTAATGGCGCTTACGTTTGGTGAGCGCA
GTGATATTTCAACGGCACAGTGGCAAGCATTACGAGACAGTGGGCTGATTCATTTGGTTGCCATTTCTGGTCTGCACATT
GGCATCGCGTTTGGTTTTGGTTATAGCCTTGGGCTCGTATTGATGCGTTTGCATCATCGCATGGGGTGGTCGCCATTCGT
CGTAGGAAGCTTGTGCGCACTAGGCTATGCTTGGTTGGCTGGCTTTACCTTGCCCACTCAACGCGCGCTCATCATGTGTT
TGCTCAATGTGGCGATGATTGTTCTCAATGTCCGTATCAATACTTTGCAGCGACTGCTTATGACGTTATCGGCGGTGCTG
CTCATCGATCCTTTTGCTGCGTTATCCAGTAGCTTTTGGATGTCCTTTATTGCTGTCTCAGTGGTGTTCTACCAACTTTC
TCTACCTCAAACTAATCGATTTTTTTTATGGCGTTTATTGACGATGCAGATTGGGTTAGTGCTGTGTATGCTTCCGGTAA
CCGCTTATTTTTTCGGTGGGGTCAGTACCAGTGCGGCGCTCTATAACTTAGTGTTTATTCCTTGGTTCAGTTTTGTGGTG
GTTCCGGCGATCTTTGTGGCTTTAGTCTGTACGTTTTTGACTTTTGATGGCGCACCTATGGTGTGGCATTGGGTGGCCAA
ATTGCTCATTCCAGTTGATTGGTCAATACATTATTCAAGCCTCAGTTGGTTTCCTATTTCTGGGGCTGTTTTGGCTCTGT
TGAGCAGTGCTCTGTTGCTGTTTGTGTTTTCACCGTTGATCTCGCGTTTTGCACTTGCGGTTTACAGCCTCATTGTGATG
GTTTCTTGGCTCACCATTCCGATAAAAACAGGTTGGCGGATTGATGTGTTAGATGTTGGGCATGGGTTAGCGGTGTTGAT
CGAAAAAGAAGGACGCTACGTGCTTTATGATACTGGTGCAAGTTGGCAAGGTGGTGATCACATCCAAGCAACAGTTGCCC
CCGTGTTAAACAAACGGGGAGCTACGCAATTAGACGGGTTGATTTTGAGTCACTTGGATAACGACCATGCAGGTGGAAGA
GCGGAAGTTGAGCGTGTTTGGCAGCCCAAATGGAAACGTGCTAGTCAAACGATAGCGGGTTACCAACCTTGTATTGCTGG
CGAACAATGGCAGTGGCAACAACTCTCTTTTGATGTTATCTGGCCACCAAAAACTGTAGCGCGGGCTTACAATCCTCACT
CTTGTGTGATTCGAATCTTTGACCAAAATACCGGTTTTTCAGTGCTTTTACCCGGGGATGTGGATGCTATGAGTGAGTGG
TTACTTGCGCGAACAGAGCAATCCTTACAAAGTCATATCCTGCTTGTACCACACCACGGTAGTAGGACATCTTCTACTGT
TGCTTTGATTAGTAAGGTGAACCCTGAAGTCGCTATTGCCTCGCTCGCTAAAGGCGGACGCTGGCAATTACCTTCCGCAC
AGGTTGTTCAACGCTACCAACAACATGGAGCAAACTGGTTGGATACGGGTGAAGCAGGGCAAATTAGCGTTATTTTTGGC
ATGCAGAATTATCAAGTTAGCAGCTTGCGTATCTCTCGCTCTCAGGCTTGGTATAGGCAGATGCTCCGTAACGAGGTAGA
ATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(24-172)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-681)

Competence protein (Competence)

(208-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

51.872

100

0.519
  comEC Vibrio parahaemolyticus RIMD 2210633

43.931

100

0.446
  comEC Vibrio campbellii strain DS40M4

43.857

100

0.444

Multiple sequence alignment