Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   RZ44_RS03820 Genome accession   NZ_CCSE01000001
Coordinates   794266..794589 (+) Length   107 a.a.
NCBI ID   WP_231856248.1    Uniprot ID   A0A078LY42
Organism   Jeotgalicoccus saudimassiliensis strain 13MG44_air     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 789266..799589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ44_RS03795 (BN1048_00785) - 790690..790926 (-) 237 WP_035808671.1 DUF2759 domain-containing protein -
  RZ44_RS03800 (BN1048_00786) - 791026..791637 (+) 612 WP_035808673.1 MBL fold metallo-hydrolase -
  RZ44_RS03805 (BN1048_00787) - 791770..792018 (-) 249 WP_035808676.1 DUF2626 family protein -
  RZ44_RS03810 (BN1048_00788) - 792243..793235 (+) 993 WP_035808678.1 ATPase, T2SS/T4P/T4SS family -
  RZ44_RS03815 (BN1048_00789) comGB 793198..794253 (+) 1056 WP_035808679.1 competence type IV pilus assembly protein ComGB -
  RZ44_RS03820 (BN1048_00790) comGC 794266..794589 (+) 324 WP_231856248.1 competence type IV pilus major pilin ComGC Machinery gene
  RZ44_RS03825 - 794567..794998 (+) 432 WP_052108776.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  RZ44_RS03830 (BN1048_00791) - 794988..795245 (+) 258 WP_035808680.1 hypothetical protein -
  RZ44_RS03835 (BN1048_00792) - 795217..795627 (+) 411 WP_052108777.1 ComGF family competence protein -
  RZ44_RS03840 (BN1048_00794) - 795788..796294 (+) 507 WP_052108778.1 shikimate kinase -
  RZ44_RS03845 (BN1048_00796) gcvT 796526..797608 (+) 1083 WP_035808688.1 glycine cleavage system aminomethyltransferase GcvT -
  RZ44_RS03850 (BN1048_00797) - 797720..798106 (-) 387 WP_035808691.1 rhodanese-like domain-containing protein -
  RZ44_RS03855 (BN1048_00798) - 798135..798353 (-) 219 WP_035808693.1 SA1362 family protein -
  RZ44_RS03860 (BN1048_00799) - 798350..799258 (-) 909 WP_035808695.1 DUF1385 domain-containing protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11925.74 Da        Isoelectric Point: 4.6119

>NTDB_id=111315 RZ44_RS03820 WP_231856248.1 794266..794589(+) (comGC) [Jeotgalicoccus saudimassiliensis strain 13MG44_air]
MRKTMNRKFKQKEEGFTLIEMLLVLLVISVLIILIIPNIAAQSRNVQDTGCEAQVRMVQSQIEAYTLNEGGRPSSIQDLV
PEYLTAEQVSCQNGESITITNGEAARE

Nucleotide


Download         Length: 324 bp        

>NTDB_id=111315 RZ44_RS03820 WP_231856248.1 794266..794589(+) (comGC) [Jeotgalicoccus saudimassiliensis strain 13MG44_air]
ATGAGAAAAACGATGAACCGTAAGTTTAAGCAAAAAGAAGAGGGCTTTACACTGATTGAAATGCTGCTGGTGCTTCTCGT
TATATCCGTGCTGATTATACTGATCATCCCGAATATCGCTGCACAGAGCAGAAATGTACAGGACACAGGCTGCGAAGCAC
AGGTGCGCATGGTTCAGAGTCAGATTGAGGCATACACGCTGAATGAAGGCGGCAGACCATCATCCATTCAGGACCTCGTG
CCGGAATACTTAACAGCTGAACAGGTCAGCTGCCAAAACGGAGAATCAATTACGATTACTAATGGCGAAGCAGCAAGAGA
GTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A078LY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

60.204

91.589

0.551
  comGC Staphylococcus aureus N315

60.204

91.589

0.551
  comGC/cglC Streptococcus mitis SK321

41.284

100

0.421
  comGC/cglC Streptococcus pneumoniae TIGR4

39.815

100

0.402
  comGC Bacillus subtilis subsp. subtilis str. 168

41.053

88.785

0.364

Multiple sequence alignment