Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H702_RS02755 Genome accession   NZ_AUZH01000012
Coordinates   92118..92624 (+) Length   168 a.a.
NCBI ID   WP_039696324.1    Uniprot ID   A0A091BVA5
Organism   Streptococcus equinus JB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 87118..97624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H702_RS02735 (H702_02830) - 88815..90239 (+) 1425 WP_039696322.1 SpaA isopeptide-forming pilin-related protein -
  H702_RS02740 (H702_02835) - 90372..91274 (+) 903 WP_180367878.1 class C sortase -
  H702_RS02745 (H702_02840) - 91464..91610 (+) 147 WP_228380491.1 ATP-dependent protease -
  H702_RS02750 (H702_02845) rpsF 91816..92106 (+) 291 WP_006531977.1 30S ribosomal protein S6 -
  H702_RS02755 (H702_02850) ssb 92118..92624 (+) 507 WP_039696324.1 single-stranded DNA-binding protein Machinery gene
  H702_RS02760 (H702_02855) rpsR 92685..92924 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  H702_RS10475 - 93072..93305 (+) 234 WP_236726576.1 hypothetical protein -
  H702_RS10480 - 93326..93595 (+) 270 WP_236726577.1 hypothetical protein -
  H702_RS02770 (H702_02865) - 93597..93821 (+) 225 WP_039696444.1 helix-turn-helix domain-containing protein -
  H702_RS02775 (H702_02870) - 93808..94251 (+) 444 WP_039696325.1 hypothetical protein -
  H702_RS02780 (H702_02875) - 94299..94952 (-) 654 WP_039696326.1 DUF1129 domain-containing protein -
  H702_RS02785 (H702_02880) - 95289..96233 (-) 945 WP_039696327.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18559.17 Da        Isoelectric Point: 4.9008

>NTDB_id=111303 H702_RS02755 WP_039696324.1 92118..92624(+) (ssb) [Streptococcus equinus JB1]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLVGVTGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSGGSYNGGFNNNSSFGGSSNGGFSSQSSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=111303 H702_RS02755 WP_039696324.1 92118..92624(+) (ssb) [Streptococcus equinus JB1]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAATCAAAATGGTGAACGCGAAGCAGATTTTATTAACTGTGTTATTT
GGCGTCAGCAAGCTGAAAACTTGGCTAACTGGGCTAAAAAAGGCACATTGGTTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAACCAACAAGGCCAACGTGTTTACGTAACTGAGGTCGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCTTACAACGGTGGATTTAACAACAATTCATCATTTGGTGGATCTTCTAATGGTG
GTTTCTCATCACAATCTTCACAACAAACACCTAACTTCGGTCGTGACGAAAGCCCATTTGGTAATTCAAACCCAATGGAT
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A091BVA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.765

100

0.625
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.659

100

0.625
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.095

0.369

Multiple sequence alignment