Detailed information NTG1112605

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KHO07_RS04135
• Genome accession: NZ_HG995459
• Coordinates: 898293..899624 (-)
• Length: 443 a.a.
• NCBI ID: WP_150734754.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PP3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 893293..904624

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHO07_RS04120	-	893609..896704 (+)	3096	WP_212626530.1	PilC/PilY family type IV pilus protein	-
KHO07_RS04125	-	896719..897120 (+)	402	WP_150734752.1	type IV pilin protein	-
KHO07_RS04130	thiO	897177..898277 (+)	1101	WP_212626531.1	glycine oxidase ThiO	-
KHO07_RS04135	pilR	898293..899624 (-)	1332	WP_150734754.1	sigma-54 dependent transcriptional regulator	Regulator
KHO07_RS04140	pilS	899627..901216 (-)	1590	WP_212627585.1	ATP-binding protein	Regulator
KHO07_RS04145	-	901206..901439 (-)	234	WP_212626532.1	PP0621 family protein	-
KHO07_RS04150	-	901577..902599 (-)	1023	WP_075948413.1	outer membrane protein assembly factor BamD	-
KHO07_RS04155	rluD	902751..903713 (+)	963	WP_075948414.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
KHO07_RS04160	pgeF	903710..904435 (+)	726	WP_212626533.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 443 a.a.
• Molecular weight: 49494.97 Da
• Isoelectric Point: 6.6177

>NTDB_id=1112605 KHO07_RS04135 WP_150734754.1 898293..899624(-) (pilR) [Pseudomonas sp. PP3]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTYSARDASEALALLKRETFDLCLTDMRLPDGTGLELVQHIQQRYPQTPVA
MITAYGNVDTAINALKAGAFDFLTKPVDLNRLRELVSSALLLPAPGGVIDRRLLGDSLPMRNLRKQIDKLARSQAPVYIS
GESGSGKELVARLIHDRGPRANQAFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAQGGTLFLDEVADLPLP
MQVKLLRAIQEKAVRSVGGQQEMVVDVRILCATHKDLGAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEPLASHVLK
RLAADTGQPVAKLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEAGDLRLAEGNCMPEGGLPDLTQIDNLEAYL
ENVERQLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1332 bp

>NTDB_id=1112605 KHO07_RS04135 WP_150734754.1 898293..899624(-) (pilR) [Pseudomonas sp. PP3]
ATGAGCCCACGGCAAAAAGTCTTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTACAGCGCGCGTGACGCGAGCGAGGCCCTGGCCCTGCTCAAGCGCGAGACCTTCGATCTGTGCCTGA
CCGACATGCGCCTGCCGGATGGCACCGGCCTGGAGCTGGTGCAGCACATCCAGCAACGCTACCCCCAGACCCCGGTGGCC
ATGATCACCGCGTACGGCAACGTCGACACGGCGATTAACGCGCTCAAGGCCGGTGCATTCGACTTCCTCACCAAACCGGT
GGACCTTAATCGCTTGCGGGAACTGGTCAGCAGCGCCCTGCTCCTGCCTGCCCCCGGCGGCGTGATTGATCGACGCCTGC
TGGGCGACTCATTGCCCATGCGCAATTTACGCAAACAGATCGACAAACTGGCGCGCAGCCAGGCCCCGGTGTACATCAGT
GGCGAATCCGGTAGCGGCAAGGAACTGGTGGCCCGATTGATCCATGACCGCGGCCCGCGGGCCAACCAGGCGTTCGTTCC
GGTCAACTGCGGAGCGATTCCGTCGGAACTGATGGAAAGCGAGTTTTTCGGTCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAGCCGGGACTGTTCCAGGCCGCCCAGGGTGGCACGCTGTTTCTTGACGAGGTGGCAGACCTGCCGCTGCCG
ATGCAGGTCAAACTGTTGCGGGCGATTCAGGAAAAAGCCGTTCGCAGCGTCGGTGGCCAGCAGGAAATGGTGGTCGATGT
GCGCATTCTTTGCGCTACCCACAAGGACCTTGGCGCCGAAGTCGCCGCGGAACGCTTTCGCCAGGATTTGTATTACCGCT
TGAACGTGATCGAACTGCGCGTACCGCCCTTGCGCGAACGCCGTGACGACATCGAGCCGTTGGCCAGCCACGTGCTCAAG
CGCCTGGCTGCCGACACCGGTCAACCGGTGGCAAAACTGCACCCACAAGCACTCGACGCGCTGAAAAGCTACCGTTTCCC
CGGCAATGTGCGGGAACTGGAGAACATGCTCGAGCGGGCTCACACCCTCTGCGAGAACAAACAGATCGAGGCCGGCGACT
TGCGACTGGCCGAGGGAAACTGCATGCCTGAGGGTGGGTTGCCGGATTTGACGCAGATCGACAATCTTGAAGCGTATCTG
GAAAACGTCGAGCGTCAGCTGATTCTCCAGGCACTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGCTCAGCGGCTGAA
TCTTTCGTTCAGGTCAATGCGTTACAGGCTGAAGAAGCTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (400-440)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.104	100	0.781
pilR	Acinetobacter baumannii strain A118	48.584	100	0.503
luxO	Vibrio cholerae strain A1552	36.343	100	0.363