Detailed information NTG1112524

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: KHN94_RS09725
• Genome accession: NZ_HG992758
• Coordinates: 2142902..2145160 (-)
• Length: 752 a.a.
• NCBI ID: WP_182029226.1
• Uniprot ID: -
• Organism: Vibrio sp. B1FLJ16 isolate B1REV17
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2137902..2150160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHN94_RS09705 (ACOMICROBIO_LOCUS1387)	kdsB	2139174..2139932 (-)	759	WP_182008506.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KHN94_RS09710 (ACOMICROBIO_EPCKBFOG_01986)	-	2139932..2140111 (-)	180	WP_005378451.1	Trm112 family protein	-
KHN94_RS09715 (ACOMICROBIO_LOCUS1388)	lpxK	2140092..2141099 (-)	1008	WP_182029224.1	tetraacyldisaccharide 4'-kinase	-
KHN94_RS09720 (ACOMICROBIO_LOCUS1389)	msbA	2141122..2142870 (-)	1749	WP_182008508.1	lipid A ABC transporter ATP-binding protein/permease MsbA	-
KHN94_RS09725 (ACOMICROBIO_EPCKBFOG_01989)	comEC	2142902..2145160 (-)	2259	WP_182029226.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KHN94_RS09730 (ACOMICROBIO_EPCKBFOG_01990)	-	2145169..2145678 (+)	510	WP_182008510.1	DUF2062 domain-containing protein	-
KHN94_RS09735 (ACOMICROBIO_LOCUS1390)	lolE	2146033..2147277 (-)	1245	WP_182029578.1	lipoprotein-releasing ABC transporter permease subunit LolE	-
KHN94_RS09740 (ACOMICROBIO_LOCUS1391)	lolD	2147280..2147987 (-)	708	WP_182029580.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
KHN94_RS09745 (ACOMICROBIO_LOCUS1392)	lolC	2147980..2149188 (-)	1209	WP_182029582.1	lipoprotein-releasing ABC transporter permease subunit LolC	-
KHN94_RS09750 (ACOMICROBIO_EPCKBFOG_01994)	-	2149471..2150040 (+)	570	WP_182008514.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 752 a.a.
• Molecular weight: 83902.26 Da
• Isoelectric Point: 8.4363

>NTDB_id=1112524 KHN94_RS09725 WP_182029226.1 2142902..2145160(-) (comEC) [Vibrio sp. B1FLJ16 isolate B1REV17]
MTLSEKSWTLVLFVASVISSAWWPIMPDWPWLLLGIITTGLLIKLRRGLISIGIIWGFMVVIIHGNVVEYQRQALLKSGV
NSTITGEVDSSFKQISHGYVGIVTINQVNDHNLLPFLKPKVRLVTPFPIPVNSEFTTTAQVKPIFGLRNEAGFDAEKGAM
GQGILARVIVPAEASWMIRTSSSFRQTFIDRVLMDISHLNHLPLISALAFADRSNLDDDDWRELRDSGLLHLVSISGLHI
GMAFSFGLVLGTGVRIVFPRWALIPSITGLSVALGYAWMADFSLPTVRAILVCVIYVLLKHVLIYWSAWRVVLLAVAIQL
FIQPFASFSMSFWLSYLSVGLVLFAVHLVQMQKGSLIAKIRAAFSMQLCLSLLVVPLGAYFFSGFSLSAILYNLVFIPWF
GFVVVPLMFLALFLSLLLPDLANPVWQLVDFSLWPLSESLQYATGTWMPLSLETTWLFALLSVCLVLKRFLSGQAWLLLV
AVVVCVSSIRDRYKEGWRVDVLDVGHGLAVIIEKDGQVLLYDTGKAWQGGSIAEQVITPILQRRGYKVIDSLVLSHVDND
HAGGQQFIEEAFAPVVKRSSQYFQGYQACVTGENWVWQGLDIQVLWPPKLVRRAYNPHSCVLRLSDPESGFNVLLTGDIE
AISEWILLREPEKLRSELILVPHHGSKSSSNPRFIEAISPAIAIASLAKDNQWGMPAKSVVSSYQNAGALWLDTGESGQV
TFKVSEGKWYFSTKRSDTFGPWYRQMLRKGVE

Nucleotide

• Length: 2259 bp

>NTDB_id=1112524 KHN94_RS09725 WP_182029226.1 2142902..2145160(-) (comEC) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGTGTTATTTGTAGCAAGTGTCATTTCATCAGCCTGGTGGCCGATTATGCC
GGACTGGCCTTGGTTACTGCTGGGAATAATTACCACTGGCTTACTTATCAAATTACGTCGTGGCTTAATCAGCATAGGCA
TAATCTGGGGCTTTATGGTCGTCATTATCCACGGAAATGTGGTTGAGTATCAGCGACAAGCCCTTTTAAAATCAGGGGTG
AATAGTACCATAACTGGCGAAGTTGACAGCTCTTTTAAGCAAATAAGTCATGGATATGTAGGTATCGTGACTATAAATCA
GGTCAACGATCACAACTTATTACCTTTTCTTAAACCTAAAGTGCGTTTAGTCACCCCTTTTCCCATCCCTGTTAACAGCG
AATTTACGACGACGGCGCAGGTTAAGCCTATATTCGGATTGCGTAATGAAGCCGGGTTCGATGCAGAAAAAGGGGCAATG
GGGCAAGGCATTTTAGCCAGAGTCATTGTGCCTGCCGAAGCGAGTTGGATGATACGAACCAGCTCCAGCTTTCGCCAGAC
TTTTATTGACCGGGTATTGATGGATATATCTCATCTCAACCATCTGCCGTTAATCAGTGCATTGGCTTTTGCTGACCGGT
CAAACCTTGACGATGATGACTGGAGAGAACTCAGAGACAGTGGCTTACTGCATCTGGTCTCAATTTCAGGTCTGCACATT
GGGATGGCCTTTAGTTTTGGTTTGGTACTTGGCACCGGAGTTCGTATTGTTTTCCCCCGTTGGGCGCTTATACCTTCAAT
CACCGGGTTATCTGTAGCTCTCGGTTATGCATGGATGGCGGACTTTTCACTACCAACGGTTCGGGCAATATTGGTCTGCG
TTATTTATGTATTGCTCAAACACGTTCTGATTTACTGGAGTGCATGGCGGGTGGTATTGCTGGCGGTGGCTATCCAGTTA
TTCATTCAGCCTTTTGCGTCATTTAGTATGAGTTTCTGGCTGTCCTATTTGTCGGTTGGCTTGGTACTGTTTGCGGTTCA
TTTGGTCCAAATGCAAAAGGGCTCCCTGATTGCTAAAATCCGTGCAGCCTTTAGCATGCAACTTTGTCTGAGTTTGTTGG
TTGTCCCTCTTGGTGCTTACTTTTTCAGCGGCTTTAGCTTGTCAGCAATCCTCTACAATCTGGTTTTTATTCCTTGGTTT
GGGTTTGTCGTTGTTCCACTCATGTTTTTGGCATTATTTCTTTCGTTACTGCTGCCGGATTTGGCCAACCCAGTATGGCA
ATTAGTGGACTTTTCGCTTTGGCCGCTAAGCGAATCACTTCAGTATGCGACTGGAACCTGGATGCCGCTTTCACTTGAAA
CGACATGGCTTTTTGCCTTGTTAAGTGTTTGTCTTGTTCTGAAGCGCTTTTTATCGGGTCAGGCTTGGTTGCTGTTAGTT
GCCGTTGTCGTCTGCGTCAGTTCAATACGTGATCGCTATAAAGAAGGTTGGCGAGTGGATGTTCTCGATGTCGGGCATGG
CTTGGCGGTCATTATCGAAAAAGACGGTCAAGTTCTACTGTACGATACAGGGAAAGCCTGGCAGGGAGGCAGTATTGCCG
AACAGGTTATCACTCCGATACTCCAACGCAGGGGTTACAAGGTGATTGATAGTCTGGTGCTTAGCCATGTTGATAATGAC
CATGCCGGAGGGCAGCAGTTCATTGAAGAGGCATTTGCGCCGGTAGTAAAACGCAGTAGCCAGTATTTTCAAGGTTATCA
AGCCTGTGTTACGGGAGAAAACTGGGTATGGCAGGGACTCGATATCCAAGTTCTCTGGCCACCCAAACTGGTCAGGCGCG
CTTATAATCCTCACTCATGTGTACTAAGACTCAGCGATCCGGAATCCGGTTTTAATGTACTTCTTACCGGAGATATTGAA
GCTATTAGTGAGTGGATACTATTAAGAGAGCCAGAAAAACTACGCAGCGAGTTGATACTTGTGCCTCATCACGGCAGTAA
AAGCTCGTCTAATCCGCGATTTATTGAGGCGATTTCACCGGCAATCGCCATTGCATCTTTAGCAAAAGACAATCAGTGGG
GGATGCCTGCTAAGTCGGTCGTTTCCTCTTACCAAAATGCTGGCGCTCTTTGGCTCGATACCGGCGAGAGTGGTCAAGTA
ACGTTCAAAGTAAGTGAAGGCAAGTGGTACTTTAGCACCAAACGCAGCGATACATTTGGGCCTTGGTATAGGCAGATGCT
GCGTAAGGGGGTAGAATAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (208-467)

• Metallo-beta-lactamase superfamily (Lactamase_B) (504-679)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Vibrio parahaemolyticus RIMD 2210633	64.628	100	0.646
comEC	Vibrio campbellii strain DS40M4	63.963	100	0.64
comEC	Vibrio cholerae strain A1552	41.161	100	0.415