Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   KHO06_RS15320 Genome accession   NZ_HG992751
Coordinates   3305304..3305936 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3300304..3310936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS15300 (ACOMICROBIO_LMKGKHOH_00306) - 3302200..3302679 (+) 480 WP_005432772.1 TIGR02444 family protein -
  KHO06_RS15305 (ACOMICROBIO_LMKGKHOH_00307) - 3302780..3303787 (+) 1008 WP_212581838.1 hydrolase -
  KHO06_RS15310 (ACOMICROBIO_LMKGKHOH_00308) - 3303858..3304070 (+) 213 WP_005432763.1 YheU family protein -
  KHO06_RS15315 (ACOMICROBIO_LOCUS2057) - 3304195..3305064 (+) 870 WP_005432770.1 phosphoribulokinase -
  KHO06_RS15320 (ACOMICROBIO_LOCUS2058) crp 3305304..3305936 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  KHO06_RS15325 (ACOMICROBIO_LMKGKHOH_00311) - 3306227..3307018 (-) 792 WP_038892627.1 DUF1338 domain-containing protein -
  KHO06_RS15330 (ACOMICROBIO_LOCUS2059) astD 3307283..3308740 (-) 1458 WP_212581839.1 succinylglutamate-semialdehyde dehydrogenase -
  KHO06_RS15335 (ACOMICROBIO_LOCUS2060) astA 3308769..3309788 (-) 1020 WP_077262123.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=1112499 KHO06_RS15320 WP_005381432.1 3305304..3305936(+) (crp) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1112499 KHO06_RS15320 WP_005381432.1 3305304..3305936(+) (crp) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGTGAGACAGTAGGCCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment