Detailed information NTG1112481

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: KHO06_RS12695
• Genome accession: NZ_HG992751
• Coordinates: 2752770..2755028 (-)
• Length: 752 a.a.
• NCBI ID: WP_212581698.1
• Uniprot ID: -
• Organism: Vibrio sp. B1FIG11 isolate LMG10946-nano
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2747770..2760028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHO06_RS12675 (ACOMICROBIO_LOCUS1699)	kdsB	2749056..2749814 (-)	759	WP_038891570.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KHO06_RS12680 (ACOMICROBIO_LMKGKHOH_03131)	-	2749814..2749993 (-)	180	WP_005378451.1	Trm112 family protein	-
KHO06_RS12685 (ACOMICROBIO_LOCUS1700)	lpxK	2749974..2750981 (-)	1008	WP_212581697.1	tetraacyldisaccharide 4'-kinase	-
KHO06_RS12690 (ACOMICROBIO_LOCUS1701)	msbA	2750987..2752738 (-)	1752	WP_005431688.1	lipid A ABC transporter ATP-binding protein/permease MsbA	-
KHO06_RS12695 (ACOMICROBIO_LMKGKHOH_03134)	comEC	2752770..2755028 (-)	2259	WP_212581698.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KHO06_RS12700 (ACOMICROBIO_LMKGKHOH_03135)	-	2755037..2755546 (+)	510	WP_005431694.1	DUF2062 domain-containing protein	-
KHO06_RS12705 (ACOMICROBIO_LOCUS1702)	lolE	2755749..2756993 (-)	1245	WP_212581699.1	lipoprotein-releasing ABC transporter permease subunit LolE	-
KHO06_RS12710 (ACOMICROBIO_LOCUS1703)	lolD	2756996..2757703 (-)	708	WP_212581700.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
KHO06_RS12715 (ACOMICROBIO_LOCUS1704)	lolC	2757696..2758904 (-)	1209	WP_212581701.1	lipoprotein-releasing ABC transporter permease subunit LolC	-
KHO06_RS12720 (ACOMICROBIO_LMKGKHOH_03139)	-	2759169..2759738 (+)	570	WP_212581702.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 752 a.a.
• Molecular weight: 84063.35 Da
• Isoelectric Point: 9.7946

>NTDB_id=1112481 KHO06_RS12695 WP_212581698.1 2752770..2755028(-) (comEC) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPINSEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGIVARAVTPDDAKWLIRTHSSFRPQIITAVDTHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLLFPKFVHLPSAVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPIAFQLAGVLWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSLVTLV
MLVTGVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVALYDTGKAWNSGSIAQQVISPVLHRRGFGTIDMFIISHADSD
HAGGRQYIEQYFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAANAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE

Nucleotide

• Length: 2259 bp

>NTDB_id=1112481 KHO06_RS12695 WP_212581698.1 2752770..2755028(-) (comEC) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCATTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTGTCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACCGCA
AATCATTACGGCCGTTGATACTCATATTGCTGAACTTGACCATTTCCCGTTAATCAGTGCATTAGCATTTAGTGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCGATCTCTGGTTTGCATATT
GGAATGGCGTTTGCGTTTGGCATGAGTTTGGGCTTTGTCATTCGGCTTCTATTCCCCAAGTTTGTTCACCTTCCTTCCGC
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCCTTACCTACAACCCGTGCTTTTTCGGTTTGTG
TCATTTATCTCGTGCTTAAAGCGGCTTTGGTTCATTGGAGTCCTTGGCGAGTGTTACTACTCGCTGTCTCGATACAGCTT
TTCATCGAGCCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTGGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTACTTACTTTACTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTGTCCATTGCTTACAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGCTGATTGTAACCCCAATTGCTTTTCAGTTGGCTGGTGTGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTCGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGCTCGTTACGTTAGTC
ATGCTAGTGACGGGTGTCGCCCTATTTTATGAGCGTACAACAAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCATGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGGCGCTTTATGACACAGGCAAAGCTTGGAACTCAGGGAGCATAGCTC
AGCAAGTTATCTCTCCCGTATTACATCGCAGAGGTTTTGGTACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCTGGAGGTAGGCAGTATATAGAGCAGTACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCCTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGTTGGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAGTGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAATGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (504-671)

• Competence protein (Competence) (208-466)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Vibrio campbellii strain DS40M4	97.872	100	0.979
comEC	Vibrio parahaemolyticus RIMD 2210633	66.622	100	0.666
comEC	Vibrio cholerae strain A1552	41.223	100	0.412