Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   KHN79_RS12715 Genome accession   NZ_HG992749
Coordinates   2785454..2786086 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio sp. B1FLJ16     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2780454..2791086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS12695 (ACOMICROBIO_FLGHMIGD_02571) - 2782125..2782613 (+) 489 WP_182011639.1 TIGR02444 family protein -
  KHN79_RS12700 (ACOMICROBIO_FLGHMIGD_02572) - 2782699..2783706 (+) 1008 WP_182011638.1 hydrolase -
  KHN79_RS12705 (ACOMICROBIO_FLGHMIGD_02573) - 2783740..2783952 (+) 213 WP_182011637.1 YheU family protein -
  KHN79_RS12710 (ACOMICROBIO_LOCUS1852) - 2784344..2785213 (+) 870 WP_182011636.1 phosphoribulokinase -
  KHN79_RS12715 (ACOMICROBIO_LOCUS1853) crp 2785454..2786086 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  KHN79_RS12720 (ACOMICROBIO_FLGHMIGD_02576) - 2786404..2787195 (-) 792 WP_182011635.1 DUF1338 domain-containing protein -
  KHN79_RS12725 (ACOMICROBIO_LOCUS1854) astD 2787319..2788776 (-) 1458 WP_182011634.1 succinylglutamate-semialdehyde dehydrogenase -
  KHN79_RS12730 (ACOMICROBIO_LOCUS1855) astA 2788805..2789824 (-) 1020 WP_182011633.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=1112453 KHN79_RS12715 WP_005381432.1 2785454..2786086(+) (crp) [Vibrio sp. B1FLJ16]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1112453 KHN79_RS12715 WP_005381432.1 2785454..2786086(+) (crp) [Vibrio sp. B1FLJ16]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTGATTCACGCGGGTGAAAAAGCTGAAACGTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGTGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGTACAGCTTGGGTTCGAGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTTAAGAAATTCCGCCAACTTAT
CCAAGTAAACCCAGACATCCTGATGCGTCTTTCTGCGCAGATGGCTCGTCGCCTTCAGGTAACCAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCGATGACTCAC
CCAGATGGCATGCAAATCAAGATCACTCGTCAGGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGCCGTAT
CTTAAAGATGCTGGAAGAGCAGAACCTGATCTCTGCGCACGGTAAAACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment