Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   KHN79_RS09215 Genome accession   NZ_HG992749
Coordinates   2034887..2037145 (-) Length   752 a.a.
NCBI ID   WP_182008509.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2029887..2042145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS09195 (ACOMICROBIO_LOCUS1336) kdsB 2031159..2031917 (-) 759 WP_182008506.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KHN79_RS09200 (ACOMICROBIO_FLGHMIGD_01863) - 2031917..2032096 (-) 180 WP_005378451.1 Trm112 family protein -
  KHN79_RS09205 (ACOMICROBIO_LOCUS1337) lpxK 2032077..2033084 (-) 1008 WP_182008507.1 tetraacyldisaccharide 4'-kinase -
  KHN79_RS09210 (ACOMICROBIO_LOCUS1338) msbA 2033107..2034855 (-) 1749 WP_182008508.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  KHN79_RS09215 (ACOMICROBIO_FLGHMIGD_01866) comEC 2034887..2037145 (-) 2259 WP_182008509.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KHN79_RS09220 (ACOMICROBIO_FLGHMIGD_01867) - 2037154..2037663 (+) 510 WP_182008510.1 DUF2062 domain-containing protein -
  KHN79_RS09225 (ACOMICROBIO_LOCUS1339) lolE 2038018..2039262 (-) 1245 WP_182008511.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  KHN79_RS09230 (ACOMICROBIO_LOCUS1340) lolD 2039265..2039972 (-) 708 WP_182008512.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KHN79_RS09235 (ACOMICROBIO_LOCUS1341) lolC 2039965..2041173 (-) 1209 WP_182008513.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  KHN79_RS09240 (ACOMICROBIO_FLGHMIGD_01871) - 2041456..2042025 (+) 570 WP_182008514.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 83814.16 Da        Isoelectric Point: 8.2399

>NTDB_id=1112433 KHN79_RS09215 WP_182008509.1 2034887..2037145(-) (comEC) [Vibrio sp. B1FLJ16]
MTLSEKSWTLVLFVASVISSAWWPIMPDWPWLLLGIITTGLLIKLRRGLISIGIIWGFMVVIIHGNVVEYQRQALLKSGV
NSTITGEVDSSFKQISHGYVGIVTINQVNDHNLLPFLKPKVRLVTPFPIPVNSEFTTTAQVKPIFGLRNEAGFDAEKGAM
GQGISARVIVPADASWMIRTTSSFRQTFIDRVLMDISHLDHLPLISALAFADRSSLDDDDWIELRDSGLLHLISISGLHI
GMAFSFGLVLGVGVRIVFPRWALIPSITGLSVALGYAWMADFSLPTVRAILVCVIYVLLKHALIYWSAWRVVLLAVAIQL
FIQPFASFSMSFWLSYLSVGLVLFAVHLVQMQKGSLIAKIRAAFSMQLCLSLLVVPLGAYFFSGFSLSAILYNLVFIPWF
GFVVVPLMFLALFLSLLLPDLANPVWQLVDFSLWPLSESLQYALGTWLTLSLETTWLFALLSVCLVLKRFLSSQAWVLLV
AVVVCVSSMRDRYKEGWRVDVLDVGHGLAVIIEKDGQVLLYDTGKAWQGGSIAEQIITPILQRRGYTSIDTLVLSHVDND
HAGGQHIIEETFGPVVKRSSQYFQGYQACVRGESWIWQGLDIQVLWPPKLVRRAYNPHSCVLRVSDPESGINVLLTGDIE
AISEWILLREPNKLRSEIMLVPHHGSKSSSNPRFIEAVSPVIAIASLAKDNQWGMPAKSVVSSYQNAGALWLDTGESGQV
TFKVSEGKWYFSTKRSDTFGPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=1112433 KHN79_RS09215 WP_182008509.1 2034887..2037145(-) (comEC) [Vibrio sp. B1FLJ16]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGTGTTATTTGTAGCAAGTGTCATTTCATCAGCCTGGTGGCCGATTATGCC
GGACTGGCCTTGGTTACTGCTGGGAATAATTACCACTGGCTTACTTATCAAATTACGTCGTGGCTTAATCAGCATAGGCA
TAATCTGGGGCTTTATGGTCGTCATTATCCACGGCAATGTGGTTGAGTATCAGCGACAAGCCCTTTTAAAATCAGGGGTG
AATAGTACCATAACTGGCGAAGTTGACAGCTCTTTTAAGCAAATAAGTCATGGATATGTAGGTATCGTGACTATAAATCA
GGTCAACGATCACAACTTATTACCTTTTCTTAAACCTAAAGTGCGTTTAGTCACCCCTTTTCCCATCCCTGTTAACAGCG
AATTTACGACGACGGCGCAGGTTAAGCCTATATTCGGACTGCGTAATGAAGCCGGGTTCGATGCAGAAAAAGGGGCAATG
GGGCAAGGCATTTCAGCCAGAGTTATTGTGCCCGCCGATGCGAGTTGGATGATACGAACCACCTCCAGCTTTCGCCAGAC
TTTTATTGATCGGGTATTGATGGATATATCTCATCTCGACCATCTGCCGTTAATCAGTGCATTGGCTTTTGCGGACCGGT
CAAGCCTTGACGATGATGACTGGATCGAACTCAGAGACAGTGGCTTACTGCATCTGATCTCTATTTCAGGTCTGCACATT
GGGATGGCGTTTAGTTTCGGTTTGGTACTTGGCGTTGGAGTTCGTATTGTTTTCCCCCGTTGGGCGCTTATACCTTCAAT
CACCGGATTATCTGTAGCTCTTGGTTATGCATGGATGGCGGACTTTTCCTTGCCAACGGTTCGGGCAATATTGGTCTGCG
TTATTTATGTATTGCTTAAACATGCTCTAATTTACTGGAGTGCATGGAGGGTGGTATTGCTGGCGGTGGCTATCCAGTTG
TTCATACAGCCTTTTGCTTCATTTAGTATGAGTTTCTGGCTGTCCTATTTGTCGGTTGGCTTGGTACTGTTTGCGGTTCA
TTTGGTCCAAATGCAAAAGGGCTCCCTGATTGCTAAAATCCGTGCAGCCTTTAGCATGCAACTTTGTCTGAGTTTGTTGG
TTGTCCCTCTTGGTGCTTACTTTTTCAGCGGCTTTAGCTTGTCAGCAATCCTCTACAATCTGGTTTTTATTCCTTGGTTT
GGGTTTGTCGTTGTTCCACTCATGTTTTTGGCATTATTTCTTTCGTTACTGCTGCCGGATTTGGCCAACCCAGTATGGCA
ATTAGTGGACTTTTCGCTTTGGCCGCTAAGCGAATCACTTCAGTATGCACTTGGAACCTGGTTAACGCTTTCGCTTGAAA
CGACATGGCTTTTTGCCTTGTTAAGTGTTTGTCTTGTTCTGAAGCGCTTTTTATCAAGTCAAGCGTGGGTGCTTTTAGTT
GCCGTTGTAGTCTGCGTCAGTTCAATGCGTGATCGCTATAAAGAAGGTTGGCGAGTGGATGTTCTCGATGTCGGGCATGG
CTTGGCTGTCATTATCGAAAAAGACGGTCAAGTTTTACTGTACGATACGGGGAAAGCCTGGCAGGGAGGCAGTATTGCGG
AGCAGATTATCACTCCGATACTCCAACGCAGGGGTTACACGTCGATTGATACTCTGGTGCTAAGCCATGTCGATAATGAT
CATGCCGGAGGGCAGCACATCATTGAAGAGACATTTGGGCCGGTAGTAAAACGTAGTAGCCAGTATTTTCAAGGTTATCA
AGCCTGTGTTAGGGGAGAAAGCTGGATTTGGCAGGGGCTCGATATCCAGGTTCTCTGGCCACCCAAACTGGTCAGGCGCG
CTTATAACCCTCACTCATGTGTACTAAGAGTCAGCGACCCGGAATCCGGGATTAATGTGCTTCTTACCGGAGATATAGAG
GCTATTAGCGAGTGGATATTACTCAGGGAACCAAACAAACTACGGAGTGAGATCATGCTTGTGCCGCATCATGGGAGTAA
AAGCTCGTCTAATCCGCGATTTATTGAGGCGGTTTCACCAGTGATAGCCATTGCATCTTTAGCAAAAGATAATCAGTGGG
GGATGCCTGCTAAGTCGGTCGTTTCCTCTTACCAAAATGCTGGCGCTCTTTGGCTCGATACCGGCGAGAGTGGTCAAGTA
ACGTTCAAAGTAAGTGAAGGCAAGTGGTACTTTAGCACCAAACGCAGCGATACATTTGGGCCTTGGTATAGGCAGATGCT
GCGTAAGGGGGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-467)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-684)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

64.495

100

0.645
  comEC Vibrio parahaemolyticus RIMD 2210633

64.362

100

0.644
  comEC Vibrio cholerae strain A1552

41.425

100

0.418

Multiple sequence alignment