Detailed information NTG1111896

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GJA_RS03510
• Genome accession: NZ_HG322949
• Coordinates: 831803..833194 (+)
• Length: 463 a.a.
• NCBI ID: WP_038488843.1
• Uniprot ID: -
• Organism: Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 826803..838194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJA_RS03485 (GJA_725)	-	827217..828041 (+)	825	WP_038488831.1	ABC transporter permease	-
GJA_RS03490 (GJA_727)	-	828038..828859 (+)	822	WP_038488834.1	ABC transporter ATP-binding protein	-
GJA_RS03495 (GJA_728)	ccsA	828989..829792 (+)	804	WP_038488837.1	cytochrome c biogenesis protein CcsA	-
GJA_RS03500 (GJA_729)	-	829789..830043 (+)	255	WP_038488840.1	PP0621 family protein	-
GJA_RS03505 (GJA_730)	-	830047..831741 (+)	1695	WP_051780232.1	ATP-binding protein	-
GJA_RS03510 (GJA_731)	pilR	831803..833194 (+)	1392	WP_038488843.1	sigma-54 dependent transcriptional regulator	Regulator
GJA_RS03515 (GJA_732)	ampD	833191..833802 (+)	612	WP_038488846.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
GJA_RS03520 (GJA_733)	-	834162..837113 (+)	2952	WP_038488848.1	ribonucleoside-diphosphate reductase subunit alpha	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 49345.62 Da
• Isoelectric Point: 4.8894

>NTDB_id=1111896 GJA_RS03510 WP_038488843.1 831803..833194(+) (pilR) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
MGSPRVLVVDDEADLRELLEITLLKMGLDVDSAADLAQARALLAASDYALVLTDMRLPDGLGLELVREVSAGCKNTPVAV
VTAFGSADNAVVALKAGAFDYVSKPVALDQLRLLVQSALGLSAQKPKPGPATAPARLKGDSPLIQALRAQIARLARSMAP
IAISGESGSGKELAAREIHAQSARASQPFIAVNCGAIPETLMEAEFFGYRKGAFTGAAEERDGFFQAANGGTLMLDEVAD
LPLAMQVKLLRAIQERRVRKIGATAEEAVDVRIISATHQNLAEWVAAGKFRQDLFYRLNVIELVVPPLRERLDDLEILAG
AILERLGHGPQTLTPAVLAALRAYAFPGNVRELENILERALAYADDGVIAVGDLALKGGRAAEAPARPAEAAEAAEAAAP
SADSADALPDSLPDYLSRVERDIIVRALARTQFNRTQAAQLLGISFRQLRYQMQKLNIQEPDA

Nucleotide

• Length: 1392 bp

>NTDB_id=1111896 GJA_RS03510 WP_038488843.1 831803..833194(+) (pilR) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
ATGGGTTCTCCCCGCGTCCTGGTGGTCGACGATGAAGCCGACCTGCGCGAGCTACTGGAAATCACCCTGCTCAAGATGGG
ACTCGATGTCGACAGCGCGGCCGACCTGGCCCAGGCGCGCGCCTTGCTGGCGGCAAGCGACTATGCGCTGGTCTTGACCG
ACATGCGCCTGCCGGACGGGCTGGGCCTGGAACTGGTGCGCGAAGTGAGCGCTGGCTGCAAGAATACGCCGGTGGCGGTG
GTGACCGCCTTCGGCAGCGCCGACAACGCGGTGGTGGCGCTGAAAGCCGGCGCCTTCGATTATGTGTCGAAGCCGGTCGC
GCTGGACCAACTGCGCTTGCTGGTGCAATCGGCGCTCGGCCTGAGCGCGCAAAAACCGAAACCCGGGCCGGCGACCGCGC
CGGCCCGGCTGAAAGGCGATTCGCCGCTGATCCAGGCGCTGCGTGCGCAGATCGCCCGGCTGGCCCGCTCGATGGCGCCG
ATCGCCATCAGCGGCGAGTCCGGCAGCGGCAAGGAATTGGCGGCGCGTGAAATCCACGCCCAGAGCGCGCGCGCCAGCCA
GCCTTTTATCGCCGTCAATTGCGGCGCGATTCCGGAAACCCTGATGGAAGCGGAATTCTTCGGCTACCGCAAGGGCGCAT
TCACCGGCGCGGCCGAAGAGCGCGACGGTTTTTTCCAGGCCGCCAATGGCGGCACGCTGATGCTCGATGAAGTGGCCGAC
TTGCCGCTGGCGATGCAAGTCAAGCTGTTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCCACCGCCGAGGA
GGCGGTCGACGTGCGCATCATCAGCGCGACCCATCAAAACCTGGCCGAATGGGTGGCCGCCGGCAAATTCAGGCAAGACT
TGTTTTACCGGCTGAATGTGATCGAACTGGTGGTGCCGCCATTGCGCGAACGGCTCGATGACCTGGAAATACTGGCCGGC
GCGATCCTGGAGCGGCTCGGCCACGGTCCGCAGACGCTGACGCCGGCGGTGCTGGCCGCGCTGCGCGCTTATGCGTTCCC
GGGCAATGTGCGCGAGCTGGAAAATATCCTGGAACGGGCGCTGGCCTACGCCGACGATGGCGTGATCGCGGTCGGCGACC
TGGCGCTGAAGGGCGGCCGCGCTGCCGAGGCGCCGGCGCGCCCGGCCGAAGCGGCCGAAGCGGCCGAAGCGGCCGCGCCA
TCCGCCGATAGCGCCGACGCGTTGCCCGACTCGCTGCCGGATTACCTGAGCCGGGTCGAGCGCGATATCATCGTGCGGGC
GCTGGCCAGGACCCAGTTCAACCGCACCCAGGCCGCCCAATTATTGGGCATCAGTTTTCGCCAGCTGCGTTATCAAATGC
AGAAACTGAATATCCAGGAGCCCGACGCGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-115)

• Bacterial regulatory protein, Fis family (HTH_8) (416-456)

• Sigma-54 interaction domain (Sigma54_activat) (139-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	55.195	99.784	0.551
pilR	Acinetobacter baumannii strain A118	45.887	99.784	0.458