Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HMPREF9425_RS07075 Genome accession   NZ_GL831112
Coordinates   1468540..1470318 (-) Length   592 a.a.
NCBI ID   WP_003097807.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1463540..1475318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS07045 (HMPREF9425_1474) frr 1463727..1464284 (-) 558 WP_003095421.1 ribosome recycling factor -
  HMPREF9425_RS07050 (HMPREF9425_1475) pyrH 1464299..1465036 (-) 738 WP_003095632.1 UMP kinase -
  HMPREF9425_RS07055 (HMPREF9425_1476) - 1465254..1466476 (-) 1223 Protein_1439 sensor histidine kinase -
  HMPREF9425_RS07060 (HMPREF9425_1478) - 1466489..1467166 (-) 678 WP_003097797.1 response regulator transcription factor -
  HMPREF9425_RS07065 (HMPREF9425_1479) - 1467168..1467791 (-) 624 WP_003095383.1 GTP pyrophosphokinase -
  HMPREF9425_RS07070 (HMPREF9425_1482) - 1468198..1468383 (-) 186 WP_037621567.1 hypothetical protein -
  HMPREF9425_RS07075 (HMPREF9425_1484) rcrQ 1468540..1470318 (-) 1779 WP_003097807.1 ABC transporter ATP-binding protein Regulator
  HMPREF9425_RS07080 (HMPREF9425_1485) rcrP 1470308..1472122 (-) 1815 WP_003097810.1 ABC transporter ATP-binding protein Regulator
  HMPREF9425_RS07085 (HMPREF9425_1486) rcrR 1472126..1472569 (-) 444 WP_003097812.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  HMPREF9425_RS07090 (HMPREF9425_1488) - 1472757..1473167 (-) 411 WP_003097815.1 peptide deformylase -
  HMPREF9425_RS07095 (HMPREF9425_1489) gdhA 1473305..1474657 (-) 1353 WP_003095495.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65142.24 Da        Isoelectric Point: 5.5071

>NTDB_id=1111758 HMPREF9425_RS07075 WP_003097807.1 1468540..1470318(-) (rcrQ) [Streptococcus vestibularis ATCC 49124]
MENKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKGITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYVISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSIL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSSI
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVNTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNANLILVMKD
GNIIEQGNHDELMAAEGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=1111758 HMPREF9425_RS07075 WP_003097807.1 1468540..1470318(-) (rcrQ) [Streptococcus vestibularis ATCC 49124]
ATGGAAAATAAGCCAAAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCTGTCATTACAGTTATTGGACCAGATAAGCTTAAAGGAATTACCAATACTATTACTG
AAGGTATCACACCTACAAAAATGGGGACGATTCCAGGCATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTTTATATGTTATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACGGTTGCGACGGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTCCCTCTTAATTATTTCGACAGTCATTCTCAAGGAGACACACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAAGGTCTGGGTACTCTAATTACTTCAAGTATTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATTGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGCTTTCAAGGGG
CTTAATGATAAGCTCTATAAATCTATGTGGCAATCACAGTTTATCTCTGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTCATGGTCTGTCTTGTGGGTGCTATCAAAGTTATTGACGGTAGCTTGACTATTGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTCTCACAACCTCTTTCTCAAATTGCACAAGGAATTACACAACTCCAATCATCCATT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGATCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGACTTTTCAGCTC
TTGCTAAACCAGGTCAAAAGATTGCGATCGTTGGTCCAACGGGTGCTGGTAAGACAACCATTGTTAACCTGCTCATGAAA
TTCTATAATATTGATCAAGGCCGTATCACCATTGACGGTGTGAATACGAACGACATGAAACGTGAAACCGTTCATGATCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTTTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCTAAGGCCGTGGGTGTTCATCACTTCATCACCACACTTCCAAAAGGTTACGATACC
TATTTGGATGATTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCACTTCTTAAGGATGCTCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACGTCCTTTGTCATTGCCCATCGCTTATCAACCATTCGAAATGCCAACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAGAAGGTTTCTATGCCGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(371-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.75

100

0.688

Multiple sequence alignment