Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HMPREF9425_RS07080 Genome accession   NZ_GL831112
Coordinates   1470308..1472122 (-) Length   604 a.a.
NCBI ID   WP_003097810.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1465308..1477122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS07060 (HMPREF9425_1478) - 1466489..1467166 (-) 678 WP_003097797.1 response regulator transcription factor -
  HMPREF9425_RS07065 (HMPREF9425_1479) - 1467168..1467791 (-) 624 WP_003095383.1 GTP pyrophosphokinase -
  HMPREF9425_RS07070 (HMPREF9425_1482) - 1468198..1468383 (-) 186 WP_037621567.1 hypothetical protein -
  HMPREF9425_RS07075 (HMPREF9425_1484) rcrQ 1468540..1470318 (-) 1779 WP_003097807.1 ABC transporter ATP-binding protein Regulator
  HMPREF9425_RS07080 (HMPREF9425_1485) rcrP 1470308..1472122 (-) 1815 WP_003097810.1 ABC transporter ATP-binding protein Regulator
  HMPREF9425_RS07085 (HMPREF9425_1486) rcrR 1472126..1472569 (-) 444 WP_003097812.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  HMPREF9425_RS07090 (HMPREF9425_1488) - 1472757..1473167 (-) 411 WP_003097815.1 peptide deformylase -
  HMPREF9425_RS07095 (HMPREF9425_1489) gdhA 1473305..1474657 (-) 1353 WP_003095495.1 NADP-specific glutamate dehydrogenase -
  HMPREF9425_RS07100 (HMPREF9425_1490) - 1475003..1476109 (+) 1107 WP_003097817.1 AAA family ATPase -
  HMPREF9425_RS07105 (HMPREF9425_1491) - 1476173..1476934 (+) 762 WP_003097820.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67056.74 Da        Isoelectric Point: 6.2636

>NTDB_id=1111759 HMPREF9425_RS07080 WP_003097810.1 1470308..1472122(-) (rcrP) [Streptococcus vestibularis ATCC 49124]
MFKIFKRLTTKELIMIVLAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQMVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMENKVHLFSDMVVYSSYAMQVVMGFMMIIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPEHSSEKPKEVGIVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDSKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDLTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1111759 HMPREF9425_RS07080 WP_003097810.1 1470308..1472122(-) (rcrP) [Streptococcus vestibularis ATCC 49124]
ATGTTTAAAATCTTTAAACGTTTAACGACAAAAGAGTTAATCATGATTGTCTTAGCGGTGATTTTTGTTTGCTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGATATTACGACACTCTTATCAACTAAGGGAACTAAGGCATCGGATA
TTTTTGCTTGGAATACGGATGCCCCAGGGATGCGAATGCTTTTAATGTCCTTTGCGGGCTTTATGGCCTCTGTAGTGGTT
GGTTTTCTAGCTGCCAGAACAGCAGCAAGTTTTACTACTCGTCTTCGTGATGATATCTTTCATCAGGTTCTAGATTTTTC
GGATGCCGAGATTAAGAAATTCTCTATTCCTAGTCTTTTGACCCGTACGACAAACGATATTACACAATTACAGATGGTAC
TGACCATGGGCCTACAGGTCATTACACAGGGCCCTATCATGGCTATTTGGGCGATTACAAAGATTGCTGATAAAAATGGG
AACTGGCTTCTTGCCTTGCTTGTGGCTGTGGCAGTAATTGCCATTCTCATGCTCTTCCTCTTGATTATGGTCATGCCTAA
GCAACGCTTGATTCAAACTCTGACAGATAAACTTAATAGCGTAACGCGTGAATCTCTTACTGGGATTCGTGTGGTGCGTG
CCTATAACGCTGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAATCTCTTTATCGGT
CGTTCTTTTGCCTTACTGACACCGGTGATGACTGCTGTATCTAGTGGTTTGACGCTAGCTATTTATTGGATTGGTGCGCA
TCTAATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGGTGCCATGGAAAACAAGGTCCATCTCTTCTCAG
ACATGGTGGTTTACTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATAATTGTTGTCTTCTTCCTTCTTCCA
CGAGCAGTTGTAGCAGCTGGACGTATCAATGAAGTTTTAGATACTCAATCTTCAGTTTCTTACCCTGAACATAGTTCTGA
AAAGCCTAAAGAAGTGGGTATTGTCGAATTTGATGATGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGAGATACGGTTGCTTTTATTGGTTCGACTGGCTCTGGTAAATCAACACTTGTCAAC
CTTATCCCACGTTTTTATGATGCCACGCAAGGAACTATCAAGGTTGACGGTGTAGATGTGCGACATTATGACCATGAAAC
TTTGCACAATATAGTCGGTTATATTCCACAGAAGGCTGTGCTTTTCTCAGGTGATATCACGTCAAATATGACGATGGGAA
CGAGTAATAACAGTCCCCTTGATGATTCTAAGATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGATTTTGTTGAAAAT
AAAGAAGGTCAACTTAAAGCAGAGGTTGCCCAAGCCGGGTCTAACTTCTCAGGTGGACAGAAACAACGTTTGGCTATTGC
GCGTGCCTTGGCACGTAAGCCTGAAATCTTGATTTTCGATGATTCTTTCTCAGCCTTAGACTATAAGACCGATCGTAAGT
TACGTCAAGAACTGGCTGAAAAAACACAAGATTTGACCAAGTTGATTGTTGCCCAACGCATCTCTACTATTATGGATGCT
GACCAAATCTTGGTTCTTGATCAAGGTAAGGTCGTTGGTCAAGGAACCCACAAGGAACTCTTGGCTAACAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.769

100

0.679

Multiple sequence alignment