Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HMPREF9425_RS01200 Genome accession   NZ_GL831112
Coordinates   228544..229062 (+) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus vestibularis ATCC 49124     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 223544..234062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS01185 (HMPREF9425_0243) mutY 224738..225889 (-) 1152 WP_003096042.1 A/G-specific adenine glycosylase -
  HMPREF9425_RS01190 (HMPREF9425_0244) - 227085..228038 (-) 954 WP_003093427.1 hypothetical protein -
  HMPREF9425_RS01195 (HMPREF9425_0245) rpsF 228242..228532 (+) 291 WP_003093185.1 30S ribosomal protein S6 -
  HMPREF9425_RS01200 (HMPREF9425_0246) ssb 228544..229062 (+) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  HMPREF9425_RS01205 (HMPREF9425_0247) rpsR 229104..229343 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  HMPREF9425_RS01210 (HMPREF9425_0248) - 229458..230348 (-) 891 WP_037621277.1 DUF4300 family protein -
  HMPREF9425_RS01215 (HMPREF9425_0249) - 230465..231136 (-) 672 WP_003094516.1 DUF1129 domain-containing protein -
  HMPREF9425_RS01220 (HMPREF9425_0250) - 231206..232150 (-) 945 WP_037611177.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=1111729 HMPREF9425_RS01200 WP_002891844.1 228544..229062(+) (ssb) [Streptococcus vestibularis ATCC 49124]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1111729 HMPREF9425_RS01200 WP_002891844.1 228544..229062(+) (ssb) [Streptococcus vestibularis ATCC 49124]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAGGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment