Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HMPREF9319_RS08225 Genome accession   NZ_GL397128
Coordinates   1712921..1713436 (-) Length   171 a.a.
NCBI ID   WP_003066357.1    Uniprot ID   -
Organism   Streptococcus equinus ATCC 700338     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1707921..1718436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS08195 (HMPREF9319_1711) - 1709351..1710295 (+) 945 WP_003066347.1 magnesium transporter CorA family protein -
  HMPREF9319_RS08200 (HMPREF9319_1712) - 1710598..1711254 (+) 657 WP_013852223.1 DUF1129 domain-containing protein -
  HMPREF9319_RS08205 (HMPREF9319_1713) - 1711299..1711748 (-) 450 WP_003066351.1 hypothetical protein -
  HMPREF9319_RS08210 (HMPREF9319_1714) - 1711750..1711959 (-) 210 WP_003066353.1 helix-turn-helix domain-containing protein -
  HMPREF9319_RS08215 (HMPREF9319_1715) - 1711962..1712486 (-) 525 WP_003066354.1 DUF2975 domain-containing protein -
  HMPREF9319_RS08220 (HMPREF9319_1716) rpsR 1712621..1712860 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  HMPREF9319_RS08225 (HMPREF9319_1717) ssbA 1712921..1713436 (-) 516 WP_003066357.1 single-stranded DNA-binding protein Machinery gene
  HMPREF9319_RS08230 (HMPREF9319_1718) rpsF 1713448..1713738 (-) 291 WP_003066359.1 30S ribosomal protein S6 -
  HMPREF9319_RS11175 (HMPREF9319_1719) - 1713981..1714238 (-) 258 WP_003066361.1 hypothetical protein -
  HMPREF9319_RS11180 (HMPREF9319_1720) - 1714622..1714900 (-) 279 WP_003066363.1 biotin transporter BioY -
  HMPREF9319_RS08245 (HMPREF9319_1721) bioD 1714900..1715568 (-) 669 WP_003066365.1 dethiobiotin synthase -
  HMPREF9319_RS08250 (HMPREF9319_1722) bioB 1715561..1716494 (-) 934 Protein_1677 biotin synthase BioB -
  HMPREF9319_RS08255 (HMPREF9319_1723) ahpF 1716770..1718308 (-) 1539 WP_003066369.1 alkyl hydroperoxide reductase subunit F -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18919.49 Da        Isoelectric Point: 4.7187

>NTDB_id=1111703 HMPREF9319_RS08225 WP_003066357.1 1712921..1713436(-) (ssbA) [Streptococcus equinus ATCC 700338]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADNFQILESRATREGQSGGSYNGGFNNNNSSFGGSSNDGGFSSQSSQSQTPNFGRDESPFGNSN
PMDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1111703 HMPREF9319_RS08225 WP_003066357.1 1712921..1713436(-) (ssbA) [Streptococcus equinus ATCC 700338]
ATGATTAATAATGTAGTACTTGTCGGTCGTATGACTCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCTGTTGC
CACATTTACACTTGCTGTAAATCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAATTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTAACAGAGATTGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCATATAACGGTGGATTCAACAATAACAATTCATCATTTGGTGGCTCATCAAACG
ACGGTGGTTTCTCATCACAATCTTCACAATCACAAACACCTAACTTTGGTCGTGATGAAAGCCCATTTGGCAATTCAAAT
CCAATGGACATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.222

100

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.596

Multiple sequence alignment