Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   HMPREF9319_RS06965 Genome accession   NZ_GL397128
Coordinates   1463768..1464769 (-) Length   333 a.a.
NCBI ID   WP_003065802.1    Uniprot ID   -
Organism   Streptococcus equinus ATCC 700338     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1458768..1469769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS06950 (HMPREF9319_1449) thrS 1459044..1460990 (-) 1947 WP_041974366.1 threonine--tRNA ligase -
  HMPREF9319_RS06955 (HMPREF9319_1450) - 1461340..1462674 (-) 1335 WP_003065797.1 glycosyltransferase family 4 protein -
  HMPREF9319_RS06960 (HMPREF9319_1451) - 1462676..1463674 (-) 999 WP_003065799.1 glycosyltransferase family 4 protein -
  HMPREF9319_RS06965 (HMPREF9319_1452) ccpA 1463768..1464769 (-) 1002 WP_003065802.1 catabolite control protein A Regulator
  HMPREF9319_RS06970 (HMPREF9319_1453) - 1465097..1466182 (+) 1086 WP_003065805.1 M24 family metallopeptidase -
  HMPREF9319_RS11125 (HMPREF9319_1454) - 1466522..1466704 (+) 183 WP_003065808.1 NUDIX domain-containing protein -
  HMPREF9319_RS10710 (HMPREF9319_1455) - 1466714..1466887 (-) 174 WP_230321727.1 hypothetical protein -
  HMPREF9319_RS06975 (HMPREF9319_1456) - 1467069..1467818 (-) 750 WP_013852120.1 ChbG/HpnK family deacetylase -
  HMPREF9319_RS06980 (HMPREF9319_1457) - 1467828..1469231 (-) 1404 WP_003065816.1 PTS transporter subunit EIIC -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36519.57 Da        Isoelectric Point: 5.0317

>NTDB_id=1111698 HMPREF9319_RS06965 WP_003065802.1 1463768..1464769(-) (ccpA) [Streptococcus equinus ATCC 700338]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPVVLAGTVDLEHQLPS
VNIDYKAAVVDVVDILAKSNKEIAFVSGPLIDDINGKVRLAGYKEGLEKNGLSFKEGLIFEANYNYKEGFELAQRVINSG
ATAAFVAEDELAAGLLNGLFEAGKKVPEDFEIITSNDSPITSYTHPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGLITRGTTR

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1111698 HMPREF9319_RS06965 WP_003065802.1 1463768..1464769(-) (ccpA) [Streptococcus equinus ATCC 700338]
ATGAACACTGATGATACGATTACAATTTATGACGTTGCCCGAGAAGCAGGCGTCTCTATGGCAACAGTTAGTCGTGTTGT
AAATGGCAATAAAAACGTAAAGGAAAACACACGTAAAAAAGTTCTTGAAGTTATTGATCGTTTGGATTATCGTCCAAATG
CCGTTGCCCGCGGTTTAGCAAGTAAAAAGACAACAACAGTAGGTGTTGTTATTCCCAATATTGCCAATAGCTATTTCTCA
ATTCTTGCTAAAGGAATTGATGATATTGCCGCTATGTACAAGTATAATATCGTACTTGCTTCAAGTGATGAAGATGATGA
TAAGGAGGTTAACGTTGTTAACACCTTGTTTGCTAAACAAGTTGACGGTATTATCTTCATGGGACATCATTTGACTGAAA
AAATTCGTGCAGAGTTCTCTCGCTCACGCACACCAGTTGTACTTGCGGGTACAGTTGACTTAGAACACCAACTCCCAAGT
GTTAATATTGATTACAAAGCAGCGGTTGTTGATGTTGTTGATATTTTAGCTAAAAGCAATAAAGAAATTGCCTTTGTTTC
TGGTCCACTTATCGATGATATCAACGGTAAAGTGCGTTTAGCTGGTTACAAAGAAGGTCTTGAAAAAAATGGCTTATCAT
TCAAAGAAGGTCTTATCTTTGAAGCTAATTACAACTATAAAGAAGGATTTGAACTTGCACAACGTGTGATTAATTCTGGC
GCAACAGCAGCCTTTGTTGCCGAAGACGAATTGGCAGCAGGCTTACTGAACGGCTTGTTCGAAGCTGGCAAAAAAGTTCC
AGAAGACTTTGAAATCATCACAAGCAATGATTCACCAATTACATCATACACACACCCAAACCTTAGCTCAATCAGTCAAC
CAGTTTATGACCTTGGTGCTGTCAGCATGCGTATGTTGACTAAAATCATGAACAAAGAGGAACTTGAAGAAAAAGAAATT
CTTCTTAACCATGGTCTTATAACACGTGGCACAACACGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.58

100

0.796

  ccpA Streptococcus pneumoniae D39

77.177

100

0.772

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.589

99.399

0.553


Multiple sequence alignment